Difference between revisions of "WBConfCall 2014.02.20-Agenda and Minutes"

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= Agenda =
 
= Agenda =
 +
 +
== WormMine 240 on staging - Abby ==
 +
* I've noticed some issues, please help me find them all before I rebuild
 +
* http://staging.wormbase.org/tools/wormmine/begin.do
  
 
== Outstanding Help Desk issues ==
 
== Outstanding Help Desk issues ==
# Registering for WormBase community forum (From: Byung-Eun Kim, Mon, February 10, 2014)
 
 
# Help desk e-mail: Question regarding terms in annotation files (gff) (From: Assaf Gordon, Tue, November 12, 2013)
 
# Help desk e-mail: Question regarding terms in annotation files (gff) (From: Assaf Gordon, Tue, November 12, 2013)
 
# Annotate Motif feature for use on other genomes (from Paul Sternberg, https://github.com/WormBase/website/issues/2001)
 
# Annotate Motif feature for use on other genomes (from Paul Sternberg, https://github.com/WormBase/website/issues/2001)
 
# Searching for relevant rearrangements, a la Mapping Data table on legacy site (from Monica Colaiacovo, https://github.com/WormBase/website/issues/2340)
 
# Searching for relevant rearrangements, a la Mapping Data table on legacy site (from Monica Colaiacovo, https://github.com/WormBase/website/issues/2340)
# Gene class lab association (from Peter Barrett, Tue, February 18, 2014, https://github.com/WormBase/website/issues/2420)
+
# tkr gene class lab association (from Peter Barrett, Tue, February 18, 2014, https://github.com/WormBase/website/issues/2420)
 +
# C06A1.4 link to sequence (gene + nt) does not work. (from Alexandra Bezler, Thu, February 20, 2014, https://github.com/WormBase/website/issues/2424)
 +
# C06A1.4 is annotated as a 'coding pseudogene'. definition? (from Alexandra Bezler, Thu, February 20, 2014, https://github.com/WormBase/website/issues/2425)
  
 
== WS242 ==
 
== WS242 ==
 
* should be on the FTP site next week
 
* should be on the FTP site next week
 
* includes O.volvulus fixes for the Mitochondrion and CGC-names
 
* includes O.volvulus fixes for the Mitochondrion and CGC-names
* added N.americanus (clade Vb)as Tier III
+
* added N.americanus (clade Vb)as Tier III <- from Makedonka
 
* includes ncRNA updates for Tier IIs (and ncRNA biogenesis topic work)
 
* includes ncRNA updates for Tier IIs (and ncRNA biogenesis topic work)
 
* import of Inparanoid 8
 
* import of Inparanoid 8
 +
* includes descriptions from UniProt for C.elegans CDSes
 
* please send anything for the release notes
 
* please send anything for the release notes
 +
 +
== Minutes ==
 +
 +
=== SAB Meeting ===
 +
* October 6-7, 2014
 +
 +
=== WS240 WormMine ===
 +
* WormMine on staging; let Abby know of anything broken or missing
 +
* Duplicate lines (one real and one empty object)
 +
* Expr_pattern missing?
 +
 +
=== Outstanding help desk ===
 +
* Assaf Gordon e-mail (Paul Davis will respond)
 +
* Annotate Motif feature for other genomes; possible and in the pipeline
 +
* Rearrangments table and search; not yet ported over from legacy, but recognized as useful; in the pipeline
 +
* tkr gene class attribution; Chris will forward request to Tim Schedl
 +
* Coding pseudogene question (Paul Davis responding)
 +
 +
=== WS242 ===
 +
* See notes above
 +
* On FTP server early next week
 +
* Send Michael Paulini release notes stuff (e.g. Topic Curation) '''before/during weekend'''
 +
 +
=== WS241 ===
 +
*Goes into production next week

Latest revision as of 16:36, 24 February 2014

Agenda

WormMine 240 on staging - Abby

Outstanding Help Desk issues

  1. Help desk e-mail: Question regarding terms in annotation files (gff) (From: Assaf Gordon, Tue, November 12, 2013)
  2. Annotate Motif feature for use on other genomes (from Paul Sternberg, https://github.com/WormBase/website/issues/2001)
  3. Searching for relevant rearrangements, a la Mapping Data table on legacy site (from Monica Colaiacovo, https://github.com/WormBase/website/issues/2340)
  4. tkr gene class lab association (from Peter Barrett, Tue, February 18, 2014, https://github.com/WormBase/website/issues/2420)
  5. C06A1.4 link to sequence (gene + nt) does not work. (from Alexandra Bezler, Thu, February 20, 2014, https://github.com/WormBase/website/issues/2424)
  6. C06A1.4 is annotated as a 'coding pseudogene'. definition? (from Alexandra Bezler, Thu, February 20, 2014, https://github.com/WormBase/website/issues/2425)

WS242

  • should be on the FTP site next week
  • includes O.volvulus fixes for the Mitochondrion and CGC-names
  • added N.americanus (clade Vb)as Tier III <- from Makedonka
  • includes ncRNA updates for Tier IIs (and ncRNA biogenesis topic work)
  • import of Inparanoid 8
  • includes descriptions from UniProt for C.elegans CDSes
  • please send anything for the release notes

Minutes

SAB Meeting

  • October 6-7, 2014

WS240 WormMine

  • WormMine on staging; let Abby know of anything broken or missing
  • Duplicate lines (one real and one empty object)
  • Expr_pattern missing?

Outstanding help desk

  • Assaf Gordon e-mail (Paul Davis will respond)
  • Annotate Motif feature for other genomes; possible and in the pipeline
  • Rearrangments table and search; not yet ported over from legacy, but recognized as useful; in the pipeline
  • tkr gene class attribution; Chris will forward request to Tim Schedl
  • Coding pseudogene question (Paul Davis responding)

WS242

  • See notes above
  • On FTP server early next week
  • Send Michael Paulini release notes stuff (e.g. Topic Curation) before/during weekend

WS241

  • Goes into production next week