Difference between revisions of "WBConfCall 2014.01.09-Agenda and Minutes"
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== Apologies for Absence == | == Apologies for Absence == | ||
+ | |||
+ | Paul S. | ||
+ | |||
+ | ==Models== | ||
+ | |||
+ | As the call has crept up on us the models proposal deadline has been pushed back to 14th Jan to allow curators to get models in for WS242 | ||
+ | |||
+ | ===Gene_clusters=== | ||
+ | |||
+ | Curator: Karen Y. | ||
+ | |||
+ | Theses changes to the ?Gene_cluster, ?Analysis, and ?WBProcess models are meant to allow the incorporation of phylogenetic profile-based gene clusters created by <br> | ||
+ | 1. Yuval Tabach et al., 2013 (WBPaper00041947) and <br> | ||
+ | 2. Michael Paulini (using all WB nematode species)<br> | ||
+ | The proposed model changes are outlined on this google doc:<br> | ||
+ | https://docs.google.com/a/wormbase.org/document/d/1Hpjg6AwKeF5jFcCsuwb1Gy6_dj8gTPVj-_Ax1D4Vb-U/edit?usp=sharing<br> | ||
+ | Please let me know if you cannot access it. | ||
+ | |||
+ | |||
+ | ===Construct/Variation Models=== | ||
+ | |||
+ | Curator: Karen Y.? | ||
+ | |||
+ | We are still working on this, perhaps we can propose it within the 9-14th time frame? | ||
+ | |||
+ | |||
+ | === Rnaseq_library === | ||
+ | |||
+ | Curator: Gary W. | ||
+ | |||
+ | I would like to propose a new model class to hold information about | ||
+ | RNASeq libraries. | ||
+ | |||
+ | [http://wiki.wormbase.org/index.php/Rnaseq_library_details Details] | ||
+ | |||
+ | |||
+ | === GO annotation model === | ||
+ | |||
+ | |||
+ | Curator: Kimberly V. | ||
+ | |||
+ | This isn't proposed for WS242, but is currently being developed for future consideration. | ||
+ | |||
+ | Almost complete and will advise when ready. | ||
== WS242 schedule proposal == | == WS242 schedule proposal == | ||
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== Outstanding Help Desk Issues == | == Outstanding Help Desk Issues == | ||
− | Current officer (2014-01-06) James Done | + | Current officer (2014-01-06) James Done |
+ | |||
+ | = Minutes = | ||
+ | Attendance: | ||
+ | Hinxton, T. Harris, D. Raciti, X. Wang, K. Van Auken, J. Chan, | ||
+ | K. Yook, R. Kishore, W. Chen, G. Schindelman, R. Lee, J. Done, | ||
+ | P. Davis, G. Williams, K.Howe, | ||
− | = | + | ==Models== |
+ | GO Annotation Model | ||
+ | There was a discussion of pathogen species objects. | ||
+ | Raymond mentioned that one should adhere to NCBI standards. | ||
+ | |||
+ | |||
+ | RNASeq Library Class | ||
+ | There was a discussion of this library class. | ||
+ | |||
+ | |||
+ | == WS242 schedule proposal == | ||
+ | WS242 Schedule agreed. | ||
+ | Models proposal until end of business Tuesday 14th | ||
+ | Models file tagged for use 23rd/24th | ||
+ | Thursday 23 January 2014 is next meeting. | ||
+ | Submit files Tuesday 28 January 2014. | ||
+ | Upload files Friday 31 January 2014. | ||
+ | |||
+ | == Helpdesk == | ||
+ | no outstanding issues |
Latest revision as of 14:03, 13 January 2014
Contents
Agenda
Apologies for Absence
Paul S.
Models
As the call has crept up on us the models proposal deadline has been pushed back to 14th Jan to allow curators to get models in for WS242
Gene_clusters
Curator: Karen Y.
Theses changes to the ?Gene_cluster, ?Analysis, and ?WBProcess models are meant to allow the incorporation of phylogenetic profile-based gene clusters created by
1. Yuval Tabach et al., 2013 (WBPaper00041947) and
2. Michael Paulini (using all WB nematode species)
The proposed model changes are outlined on this google doc:
https://docs.google.com/a/wormbase.org/document/d/1Hpjg6AwKeF5jFcCsuwb1Gy6_dj8gTPVj-_Ax1D4Vb-U/edit?usp=sharing
Please let me know if you cannot access it.
Construct/Variation Models
Curator: Karen Y.?
We are still working on this, perhaps we can propose it within the 9-14th time frame?
Rnaseq_library
Curator: Gary W.
I would like to propose a new model class to hold information about RNASeq libraries.
GO annotation model
Curator: Kimberly V.
This isn't proposed for WS242, but is currently being developed for future consideration.
Almost complete and will advise when ready.
WS242 schedule proposal
Date | Phase |
9th - 14th Jan | Model proposals |
15th - 22nd Jan | Models Development/Incorporation |
23rd - 30th Jan | Upload Preparation |
31st Jan | Upload |
3rd Feb | WS242 Build Starts |
Outstanding Help Desk Issues
Current officer (2014-01-06) James Done
Minutes
Attendance:
Hinxton, T. Harris, D. Raciti, X. Wang, K. Van Auken, J. Chan, K. Yook, R. Kishore, W. Chen, G. Schindelman, R. Lee, J. Done, P. Davis, G. Williams, K.Howe,
Models
GO Annotation Model
There was a discussion of pathogen species objects. Raymond mentioned that one should adhere to NCBI standards.
RNASeq Library Class
There was a discussion of this library class.
WS242 schedule proposal
WS242 Schedule agreed.
Models proposal until end of business Tuesday 14th Models file tagged for use 23rd/24th Thursday 23 January 2014 is next meeting. Submit files Tuesday 28 January 2014. Upload files Friday 31 January 2014.
Helpdesk
no outstanding issues