WBConfCall 2013.11.21-Agenda and Minutes

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Agenda

Please add your agenda items here.

WS241 models

WS241 models summary WS241 Models.wrm --- all approved by curators.

Curators checked their model proposals in this file: WS241 pre-WS241 tagged models [pre-WS241]

1) ?Person class

2) ?Interaction and ?Feature models

3) ?Movie and Expression_pattern changes

3.1) Expr_pattern

3.2) Movie

4) ?Protein Class

5) Extras from the deadline call

5.1) ?Expression_cluster and ?Analysis class - Wen

5.2) ?DO_term - Ranjana

Outstanding Help Desk issues also known as house keeping

Wen: These are help desk issues that are still open.

The following are related to GFF3 implementation - no need to discuss individually on the call.

  • [2019] - gff3 implementation no discussion necessary until gff3 code is ready?
  • [2026] - gff3 implementation no discussion necessary until gff3 code is ready?
  • [2028] - gff3 implementation no discussion necessary until gff3 code is ready?
  • [2029] - gff3 implementation no discussion necessary until gff3 code is ready?
  • [2030] - gff3 implementation no discussion necessary until gff3 code is ready?
  • [2031] - gff3 implementation no discussion necessary until gff3 code is ready?
  • [2032] - gff3 implementation no discussion necessary until gff3 code is ready?
  • [910] - gff3 implementation no discussion necessary until gff3 code is ready?


Other issues:

Chris will reply to questions related to WormMine. Wen will make sure that every user gets response from us.

  • [1939] Blast tool changes
  • [1549] Extra table in Associations widget-Anatomy page
  • [1890] original problem fixed but TreeFam image still looks messed up
  • [2022] Can we scale TreeFam Image?
  • [1999] n1774 listed as sequenced but location is not known.
  • [2009] Look for wormmine model browser
  • [2012] Discussion about curation of pers. Comm [Mary Ann: The pers. comm part of this ticket is resolved, but attaching evidence to manual annotation from external curation groups is still under discussion] - NOT HELPDESK
  • [2015] External URL, karen and Abi are working on this
  • [2016] External URL, karen is working on this - NOT HELPDESK
  • [2017] slt-1 gene page is still suggesting that the gene hasn't been physically mapped, but clearly has a sequence:
  • [2018] Molecular Details widget not displaying properly on any variation page on Staging site - NOT HELPDESK
  • [2021] WikiPathway images on Topic pages - NOT HELPDESK
  • [2027] 'Associations' widget consistently timing out on the 'nucleus' GO Term page on Staging - NOT HELPDESK
  • [2034] WormMine Qury builder is looking for RNAi data although we have none
  • [2037] asked for a bunch of tracks got back Bio::GRahics error......
  • [2041] Resource Identification in the Literature project
  • [2043] vab-3 doesnt have a location on the gene page. Please fix. -- closed
  • [2044] hlh-2 does not have a gene structure either -- closed

There are lots of other issues in the system not listed here, but will be worked on when time allows.

SAB

Minutes

1. WS241 model changes. All approved by curators.

2. GFF3 implementations will be ready in WS240.