Revision as of 21:38, 21 November 2013

Agenda

Please add your agenda items here.

WS241 models summary WS241 Models.wrm --- all approved by curators.

Curators checked their model proposals in this file: WS241 pre-WS241 tagged models [pre-WS241]

1) ?Person class

2) ?Interaction and ?Feature models

3) ?Movie and Expression_pattern changes

3.1) Expr_pattern

3.2) Movie

4) ?Protein Class

5) Extras from the deadline call

5.1) ?Expression_cluster and ?Analysis class - Wen

5.2) ?DO_term - Ranjana

Wen: These are help desk issues that are still open.

The following are related to GFF3 implementation - no need to discuss individually on the call. GFF3 implementations will be ready in WS240.

Other issues:

Chris will reply to questions related to WormMine. Wen will make sure that every user gets response from us.

[1939] Blast tool changes
[1549] Extra table in Associations widget-Anatomy page
[1890] original problem fixed but TreeFam image still looks messed up
[2022] Can we scale TreeFam Image?
[1999] n1774 listed as sequenced but location is not known.
[2009] Look for wormmine model browser
[2012] Discussion about curation of pers. Comm [Mary Ann: The pers. comm part of this ticket is resolved, but attaching evidence to manual annotation from external curation groups is still under discussion] - NOT HELPDESK
[2015] External URL, karen and Abi are working on this
[2016] External URL, karen is working on this - NOT HELPDESK
[2017] slt-1 gene page is still suggesting that the gene hasn't been physically mapped, but clearly has a sequence:
[2018] Molecular Details widget not displaying properly on any variation page on Staging site - NOT HELPDESK
[2021] WikiPathway images on Topic pages - NOT HELPDESK
[2027] 'Associations' widget consistently timing out on the 'nucleus' GO Term page on Staging - NOT HELPDESK
[2034] WormMine Qury builder is looking for RNAi data although we have none
[2037] asked for a bunch of tracks got back Bio::GRahics error......
[2041] Resource Identification in the Literature project
[2043] vab-3 doesnt have a location on the gene page. Please fix. -- closed
[2044] hlh-2 does not have a gene structure either -- closed

There are lots of other issues in the system not listed here, but will be worked on when time allows.

@@ Line 32: / Line 32: @@
 == Outstanding Help Desk issues also known as house keeping ==
-Wen: These are help desk issues that are still open, please reply or close them if the issue is resolved. - not all helpdesk??
+Wen: These are help desk issues that are still open.
+The following are related to GFF3 implementation - no need to discuss individually on the call. GFF3 implementations will be ready in WS240.
-The following are related to GFF3 implementation - no need to discuss individually on the call.
 * [[https://github.com/WormBase/website/issues/2019 2019]] - gff3 implementation no discussion necessary until gff3 code is ready?
 * [[https://github.com/WormBase/website/issues/2026 2026]] - gff3 implementation no discussion necessary until gff3 code is ready?
@@ Line 46: / Line 47: @@
 Other issues:
+Chris will reply to questions related to WormMine. Wen will make sure that every user gets response from us.
 * [[https://github.com/WormBase/website/issues/1939 1939]]	Blast tool changes