Difference between revisions of "WBConfCall 2013.11.21-Agenda and Minutes"

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== WS241 model ==
== WS241 model ==
Link to WS241 models summary [[WS241 Models.wrm]]
WS241 models summary [[WS241 Models.wrm]]
Curators to check their model proposals in this file:
WS241 pre-WS241 tagged models [[http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?revision=1.396&root=ensembl&view=markup pre-WS241]]
WS241 pre-WS241 tagged models [[http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?revision=1.396&root=ensembl&view=markup pre-WS241]]

Revision as of 15:52, 21 November 2013


Please add your agenda items here.

WS241 model

WS241 models summary WS241 Models.wrm

Curators to check their model proposals in this file: WS241 pre-WS241 tagged models [pre-WS241]

1) ?Person class

2) ?Interaction and ?Feature models

3) ?Movie and Expression_pattern changes 3.1) Expr_pattern 3.2) Movie

4) ?Protein Class

5) Extras from the deadline call

5.1) ?Expression_cluster and ?Analysis class - Wen

5.2) ?DO_term - Ranjana

Outstanding Help Desk issues

Wen: These are help desk issues that are still open, please reply or close them if the issue is resolved.

The following are related to GFF3 implement

  • 2011
  • 2019
  • 2026
  • 2028
  • 2029
  • 2030
  • 2031
  • 2032
  • 910
  • 1981

Other issues:

  • 2007 already reported in #1939
  • 1549 Extra table in Associations widget-Anatomy page
  • 1890 original problem fixed but TreeFam image still looks messed up
  • 1999 n1774 listed as sequenced but location is not known.
  • 2009 Look for wormmine model browser
  • 2010 todd is working on it
  • 2012 Discussion about curation of pers. Comm [Mary Ann: The pers. comm part of this ticket is resolved, but attaching evidence to manual annotation from external curation groups is still under discussion]
  • 2015 External URL, karen and Abi are working on this
  • 2016 External URL, karen is working on this
  • 2017 slt-1 gene page is still suggesting that the gene hasn't been physically mapped, but clearly has a sequence:
  • 2018 Molecular Details widget not displaying properly on any variation page on Staging site
  • 2021 WikiPathway images on Topic pages
  • 2022 Can we scale TreeFam Image?
  • 2027 'Associations' widget consistently timing out on the 'nucleus' GO Term page on Staging
  • 2034 WormMine Qury builder is looking for RNAi data although we have none
  • 2037 asked for a bunch of tracks got back Bio::GRahics error......
  • 2041 Resource Identification in the Literature project
  • 2043 vab-3 doesnt have a location on the gene page. Please fix.
  • 2044 hlh-2 does not have a gene structure either
  • 2062 Wiggle or BEDGraph format on Gbrowse?