Difference between revisions of "WBConfCall 2013.11.21-Agenda and Minutes"

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The following are related to GFF3 implement
 
The following are related to GFF3 implement
* 2011
+
* [[https://github.com/WormBase/website/issues/2011 2011]]
* 2019
+
* [[https://github.com/WormBase/website/issues/2019 2019]]
* 2026
+
* [[https://github.com/WormBase/website/issues/2026 2026]]
* 2028
+
* [[https://github.com/WormBase/website/issues/2028 2028]]
* 2029
+
* [[https://github.com/WormBase/website/issues/2029 2029]]
* 2030
+
* [[https://github.com/WormBase/website/issues/2030 2030]]
* 2031
+
* [[https://github.com/WormBase/website/issues/2031 2031]]
* 2032
+
* [[https://github.com/WormBase/website/issues/2032 2032]]
* 910
+
* [[https://github.com/WormBase/website/issues/910 910]]
* 1981
+
* [[https://github.com/WormBase/website/issues/1981 1981]]
 
   
 
   
 
Other issues:  
 
Other issues:  
  
* 2007 already reported in #1939
+
* [[https://github.com/WormBase/website/issues/2007 2007]] already reported in #1939
* 1549 Extra table in Associations widget-Anatomy page
+
* [[https://github.com/WormBase/website/issues/1549 1549]] Extra table in Associations widget-Anatomy page
* 1890 original problem fixed but TreeFam image still looks messed up
+
* [[https://github.com/WormBase/website/issues/1890 1890]] original problem fixed but TreeFam image still looks messed up
* 1999 n1774 listed as sequenced but location is not known.
+
* [[https://github.com/WormBase/website/issues/1999 1999]] n1774 listed as sequenced but location is not known.
* 2009 Look for wormmine model browser
+
* [[https://github.com/WormBase/website/issues/2009 2009]] Look for wormmine model browser
* 2010 todd is working on it
+
* [[https://github.com/WormBase/website/issues/2010 2010]] todd is working on it
* 2012 Discussion about curation of pers. Comm [Mary Ann: The pers. comm part of this ticket is resolved, but attaching evidence to manual annotation from external curation groups is still under discussion]
+
* [[https://github.com/WormBase/website/issues/2012 2012]] Discussion about curation of pers. Comm [Mary Ann: The pers. comm part of this ticket is resolved, but attaching evidence to manual annotation from external curation groups is still under discussion]
* 2015 External URL, karen and Abi are working on this  
+
* [[https://github.com/WormBase/website/issues/2015 2015]] External URL, karen and Abi are working on this  
* 2016 External URL, karen is working on this  
+
* [[https://github.com/WormBase/website/issues/2016 2016]] External URL, karen is working on this  
* 2017 slt-1 gene page is still suggesting that the gene hasn't been physically mapped, but clearly has a sequence:
+
* [[https://github.com/WormBase/website/issues/2017 2017]] slt-1 gene page is still suggesting that the gene hasn't been physically mapped, but clearly has a sequence:
* 2018 Molecular Details widget not displaying properly on any variation page on Staging site
+
* [[https://github.com/WormBase/website/issues/2018 2018]] Molecular Details widget not displaying properly on any variation page on Staging site
* 2021 WikiPathway images on Topic pages
+
* [[https://github.com/WormBase/website/issues/2021 2021]] WikiPathway images on Topic pages
* 2022 Can we scale TreeFam Image?
+
* [[https://github.com/WormBase/website/issues/2022 2022]] Can we scale TreeFam Image?
* 2027 'Associations' widget consistently timing out on the 'nucleus' GO Term page on Staging
+
* [[https://github.com/WormBase/website/issues/2027 2027]] 'Associations' widget consistently timing out on the 'nucleus' GO Term page on Staging
* 2034 WormMine Qury builder is looking for RNAi data although we have none
+
* [[https://github.com/WormBase/website/issues/2034 2034]] WormMine Qury builder is looking for RNAi data although we have none
* 2037 asked for a bunch of tracks got back Bio::GRahics error......
+
* [[https://github.com/WormBase/website/issues/2037 2037]] asked for a bunch of tracks got back Bio::GRahics error......
* 2041 Resource Identification in the Literature project
+
* [[https://github.com/WormBase/website/issues/2041 2041]] Resource Identification in the Literature project
* 2043 vab-3 doesnt have a location on the gene page. Please fix.
+
* [[https://github.com/WormBase/website/issues/2043 2043]] vab-3 doesnt have a location on the gene page. Please fix.
* 2044 hlh-2 does not have a gene structure either
+
* [[https://github.com/WormBase/website/issues/2044 2044]] hlh-2 does not have a gene structure either
* 2062 Wiggle or BEDGraph format on Gbrowse?
+
* [[https://github.com/WormBase/website/issues/2062 2062]] Wiggle or BEDGraph format on Gbrowse?
  
 
== SAB ==
 
== SAB ==

Revision as of 15:59, 21 November 2013

Agenda

Please add your agenda items here.

WS241 models

WS241 models summary WS241 Models.wrm

Curators to check their model proposals in this file: WS241 pre-WS241 tagged models [pre-WS241]

1) ?Person class

2) ?Interaction and ?Feature models

3) ?Movie and Expression_pattern changes 3.1) Expr_pattern 3.2) Movie

4) ?Protein Class

5) Extras from the deadline call

5.1) ?Expression_cluster and ?Analysis class - Wen

5.2) ?DO_term - Ranjana

Outstanding Help Desk issues

Wen: These are help desk issues that are still open, please reply or close them if the issue is resolved.

The following are related to GFF3 implement

Other issues:

  • [2007] already reported in #1939
  • [1549] Extra table in Associations widget-Anatomy page
  • [1890] original problem fixed but TreeFam image still looks messed up
  • [1999] n1774 listed as sequenced but location is not known.
  • [2009] Look for wormmine model browser
  • [2010] todd is working on it
  • [2012] Discussion about curation of pers. Comm [Mary Ann: The pers. comm part of this ticket is resolved, but attaching evidence to manual annotation from external curation groups is still under discussion]
  • [2015] External URL, karen and Abi are working on this
  • [2016] External URL, karen is working on this
  • [2017] slt-1 gene page is still suggesting that the gene hasn't been physically mapped, but clearly has a sequence:
  • [2018] Molecular Details widget not displaying properly on any variation page on Staging site
  • [2021] WikiPathway images on Topic pages
  • [2022] Can we scale TreeFam Image?
  • [2027] 'Associations' widget consistently timing out on the 'nucleus' GO Term page on Staging
  • [2034] WormMine Qury builder is looking for RNAi data although we have none
  • [2037] asked for a bunch of tracks got back Bio::GRahics error......
  • [2041] Resource Identification in the Literature project
  • [2043] vab-3 doesnt have a location on the gene page. Please fix.
  • [2044] hlh-2 does not have a gene structure either
  • [2062] Wiggle or BEDGraph format on Gbrowse?

SAB