WBConfCall 2013.09.19-Agenda and Minutes

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1. WormBase development environment for Caltech. (local installation / access to OICR dev / Amazon AMI)

WormMine Update

Help Desk issues

Dealing with Natural Variation - from Marie-Anne Felix. (Mary Ann/Kev) https://github.com/WormBase/website/issues/1735 Would be good if interested parties could think about the issues before the meeting. I've added a few of my own comments.
Including a new method - Dan Dickinson https://github.com/WormBase/website/issues/1762 made a website for sharing protocols from our lab: http://wormcas9hr.weebly.com/. I wanted to ask if you'd consider putting a link to this page somewhere on the Wormbase website.
Gbrowse error https://github.com/WormBase/website/issues/1722 Joachim, after next release.
Add balancer location to tracks https://github.com/WormBase/website/issues/1717 Todd
extra zero in WB grant number https://github.com/WormBase/website/issues/1779 Verify?
wrong isoform information https://github.com/WormBase/website/issues/1775 Verify?
old release gateway timeout https://github.com/WormBase/website/issues/1761 Todd, links to old releases return gateway timeout
How Do I ...?: see the tiling arrays? https://github.com/WormBase/website/issues/1685 looks resolved, close?
n765 is lin-15AB, not lin-15B. https://github.com/WormBase/website/issues/1471 Karen. issue is not resolved. This issue needs input from the team - specifically, discussion about
1. how to annotate alleles that affect more than one gene, or do not lie within the defined gene sequence boundaries
2. what to display on the lin-15 page.
BLAST not working for alignment to WS235 https://github.com/WormBase/website/issues/1443 Joachim. issue resolved?
Pristionchus prl-1 mis-annotation https://github.com/WormBase/website/issues/1318 Mary-Ann. issue resolved?
wormbase-compara version is missing https://github.com/WormBase/website/issues/1231 Michael P. issue resolved?
BED file upload size limit? https://github.com/WormBase/website/issues/673 Todd. issue resolved?
Implement region search https://github.com/WormBase/website/issues/507 feature can be added to WormMine for intervals by raw coordinate only, not by intervals defined sequence feature name