Difference between revisions of "WBConfCall 2012.06.07-Agenda and Minutes"
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PCR_interactor ?PCR_product #Interactor_info | PCR_interactor ?PCR_product #Interactor_info | ||
Sequence_interactor ?Sequence #Interactor_info | Sequence_interactor ?Sequence #Interactor_info | ||
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+ | </pre> | ||
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+ | == Transgene Model == | ||
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+ | (Chris) I'd like to add a "3_UTR" tag to the ?Transgene model as a subtag of "Reporter" as such: | ||
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+ | <pre> | ||
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+ | Reporter 3_UTR ?Gene | ||
</pre> | </pre> |
Revision as of 18:20, 6 June 2012
Contents
Agenda
Models Proposals
Interaction and #Interactor_info Model
1) (Chris) I'd like to add the following tags to the main ?Interaction model:
Unaffiliated_variation ?Variation Unaffiliated_transgene ?Transgene Unaffiliated_antibody ?Antibody Unaffiliated_expr_pattern ?Expr_pattern
2) (Chris) I'd like to add Rearrangement as a subtag of the "Interactor" tag as such:
Interactor Rearrangement ?Rearrangement #Interactor_info
3) (Chris) I'd like to add two tags to the #Interactor_info hash:
Intragenic_effector_variation ?Variation XREF Interactor Intragenic_affected_variation ?Variation XREF Interactor
4) (Chris) Can we make "PCR_interactor" and "Sequence_interactor" in the ?Interaction model NOT unique? Right now they are, and this is posing problems (data is being suppressed/overwritten that shouldn't be). -- from Chris
So, go from:
PCR_interactor UNIQUE ?PCR_product #Interactor_info Sequence_interactor UNIQUE ?Sequence #Interactor_info
to...
PCR_interactor ?PCR_product #Interactor_info Sequence_interactor ?Sequence #Interactor_info
Transgene Model
(Chris) I'd like to add a "3_UTR" tag to the ?Transgene model as a subtag of "Reporter" as such:
Reporter 3_UTR ?Gene
Anatomy_term Model
raymond proposes adding four sub tags to ?Anatomy_term model
?Anatomy_term
Child Cell_c ?Anatomy_term XREF Cell_p XUNION_OF_c ?Anatomy_term XREF XUNION_OF_p Parent Cell_p ?Anatomy_term XREF Cell_c XUNION_OF_p ?Anatomy_term XREF XUNION_OF_c
the Cell_c/p tags are used to represent parent/child developmental lineage relationship between cells. the XUNION_c/p tags are for anatomy ontology to represent a specific uncertain type of lineage relationship (among nuclei). e.g. "AVFL nucleus" develops from ("P1.aaaa nucleus" XOR "W.aaa nucleus").