Difference between revisions of "WBConfCall 2012.06.07-Agenda and Minutes"

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= Models Proposals =
 
= Models Proposals =
== Interaction Model ==
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== Interaction and #Interactor_info Model==
  
#(Chris) I'd like to add the following tags to the main ?Interaction model:
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1) (Chris) I'd like to add the following tags to the main ?Interaction model:
  
 
Unaffiliated_variation  ?Variation
 
Unaffiliated_variation  ?Variation
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Unaffiliated_expr_pattern  ?Expr_pattern
 
Unaffiliated_expr_pattern  ?Expr_pattern
  
#(Chris) I'd like to add Rearrangement as a subtag of the "Interactor" tag as such:
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2) (Chris) I'd like to add Rearrangement as a subtag of the "Interactor" tag as such:
  
 
Interactor  Rearrangement  ?Rearrangement  #Interactor_info
 
Interactor  Rearrangement  ?Rearrangement  #Interactor_info
  
#(Chris) I'd like to add two tags to the #Interactor_info hash:
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3) (Chris) I'd like to add two tags to the #Interactor_info hash:
  
 
Intragenic_effector_variation  ?Variation  XREF  Interactor
 
Intragenic_effector_variation  ?Variation  XREF  Interactor
 
Intragenic_affected_variation  ?Variation  XREF  Interactor
 
Intragenic_affected_variation  ?Variation  XREF  Interactor
  
 
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4) (Chris) Can we make "PCR_interactor" and "Sequence_interactor" in the ?Interaction
 
 
#Can we make "PCR_interactor" and "Sequence_interactor" in the ?Interaction
 
 
model NOT unique? Right now they are, and this is posing problems (data is
 
model NOT unique? Right now they are, and this is posing problems (data is
 
being suppressed/overwritten that shouldn't be). -- from Chris
 
being suppressed/overwritten that shouldn't be). -- from Chris

Revision as of 18:13, 6 June 2012

Agenda

Models Proposals

Interaction and #Interactor_info Model

1) (Chris) I'd like to add the following tags to the main ?Interaction model:

Unaffiliated_variation ?Variation Unaffiliated_transgene ?Transgene Unaffiliated_antibody ?Antibody Unaffiliated_expr_pattern ?Expr_pattern

2) (Chris) I'd like to add Rearrangement as a subtag of the "Interactor" tag as such:

Interactor Rearrangement ?Rearrangement #Interactor_info

3) (Chris) I'd like to add two tags to the #Interactor_info hash:

Intragenic_effector_variation ?Variation XREF Interactor Intragenic_affected_variation ?Variation XREF Interactor

4) (Chris) Can we make "PCR_interactor" and "Sequence_interactor" in the ?Interaction model NOT unique? Right now they are, and this is posing problems (data is being suppressed/overwritten that shouldn't be). -- from Chris

Anatomy_term Model

raymond proposes adding four sub tags to ?Anatomy_term model

?Anatomy_term

   Child   Cell_c         ?Anatomy_term     XREF Cell_p
           XUNION_OF_c    ?Anatomy_term     XREF XUNION_OF_p
   Parent  Cell_p         ?Anatomy_term     XREF Cell_c
           XUNION_OF_p    ?Anatomy_term     XREF XUNION_OF_c

the Cell_c/p tags are used to represent parent/child developmental lineage relationship between cells. the XUNION_c/p tags are for anatomy ontology to represent a specific uncertain type of lineage relationship (among nuclei). e.g. "AVFL nucleus" develops from ("P1.aaaa nucleus" XOR "W.aaa nucleus").

Notes