Difference between revisions of "WBConfCall 2012.06.07-Agenda and Minutes"
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= Models Proposals = | = Models Proposals = | ||
== Interaction Model == | == Interaction Model == | ||
− | Can we make "PCR_interactor" and "Sequence_interactor" in the ?Interaction | + | |
+ | #(Chris) I'd like to add the following tags to the main ?Interaction model: | ||
+ | |||
+ | Unaffiliated_variation ?Variation | ||
+ | Unaffiliated_transgene ?Transgene | ||
+ | Unaffiliated_antibody ?Antibody | ||
+ | Unaffiliated_expr_pattern ?Expr_pattern | ||
+ | |||
+ | #(Chris) I'd like to add Rearrangement as a subtag of the "Interactor" tag as such: | ||
+ | |||
+ | Interactor Rearrangement ?Rearrangement #Interactor_info | ||
+ | |||
+ | #(Chris) I'd like to add two tags to the #Interactor_info hash: | ||
+ | |||
+ | Intragenic_effector_variation ?Variation XREF Interactor | ||
+ | Intragenic_affected_variation ?Variation XREF Interactor | ||
+ | |||
+ | |||
+ | |||
+ | #Can we make "PCR_interactor" and "Sequence_interactor" in the ?Interaction | ||
model NOT unique? Right now they are, and this is posing problems (data is | model NOT unique? Right now they are, and this is posing problems (data is | ||
being suppressed/overwritten that shouldn't be). -- from Chris | being suppressed/overwritten that shouldn't be). -- from Chris | ||
− | |||
== Anatomy_term Model == | == Anatomy_term Model == |
Revision as of 18:12, 6 June 2012
Agenda
Models Proposals
Interaction Model
- (Chris) I'd like to add the following tags to the main ?Interaction model:
Unaffiliated_variation ?Variation Unaffiliated_transgene ?Transgene Unaffiliated_antibody ?Antibody Unaffiliated_expr_pattern ?Expr_pattern
- (Chris) I'd like to add Rearrangement as a subtag of the "Interactor" tag as such:
Interactor Rearrangement ?Rearrangement #Interactor_info
- (Chris) I'd like to add two tags to the #Interactor_info hash:
Intragenic_effector_variation ?Variation XREF Interactor Intragenic_affected_variation ?Variation XREF Interactor
- Can we make "PCR_interactor" and "Sequence_interactor" in the ?Interaction
model NOT unique? Right now they are, and this is posing problems (data is being suppressed/overwritten that shouldn't be). -- from Chris
Anatomy_term Model
raymond proposes adding four sub tags to ?Anatomy_term model
?Anatomy_term
Child Cell_c ?Anatomy_term XREF Cell_p XUNION_OF_c ?Anatomy_term XREF XUNION_OF_p Parent Cell_p ?Anatomy_term XREF Cell_c XUNION_OF_p ?Anatomy_term XREF XUNION_OF_c
the Cell_c/p tags are used to represent parent/child developmental lineage relationship between cells. the XUNION_c/p tags are for anatomy ontology to represent a specific uncertain type of lineage relationship (among nuclei). e.g. "AVFL nucleus" develops from ("P1.aaaa nucleus" XOR "W.aaa nucleus").