WBConfCall 2012.02.02-Agenda and Minutes

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Agenda and Minutes for the Conference Call 2nd February 2012

Agenda

ACeDB models

Unified Interaction model - Chris & Kimberly

Legacy data incorporation (Variation Phenotype_info) - Karen

////////////////////////////////////////////
 //
// ?Phenotype_info Class
//
////////////////////////////////////////////

#Phenotype_info
add ->       Ease_of_scoring  UNIQUE ES0_Impossible_to_score
                                    ES1_Very_hard_to_score
                                    ES2_Difficult_to_score
                                    ES3_Easy_to_score


////////////////////////////////////////////
//
//Variation class
//
///////////////////////////////////////////
?Variation Evidence #Evidence
         Genetics Gene_class ?Gene_class XREF Variation
 add ->        Mating_efficiency  Male  UNIQUE ME0_Mating_not_successful
                                               ME1_Mating_rarely_successful
                                               ME2_Mating_usually_successful
                                               ME3_Mating_always_successful

                                  Hermaphrodite UNIQUE
HE0_Mating_not_successful
HE1_Mating_rarely_successful
HE2_Mating_usually_successful
HE3_Mating_always_successful

New Homology type nemNOG - Michael

#Homology_type KOG
               TWOG
               FOG
               LSE
               NOG   //eggNOG - standard cluster
               euNOG //eggNOG - eukaryote cluster
               meNOG //eggNOG - metazoan cluster
	       COG   //eggNOG - COG cluster // MH6 WS228
               nemNOG //eggNOG - nematode clusters

Re-homing of Rescued_by_Transgene from Variation -> Phenotype_info - Karen

Removal of Accession_number XREF from the Homology_group - Michael =

?Transposon, Corresponding_CDS and Corresponding_Pseudogene - Paul =

Homology_group and Accession_number, removal of XREF between classes and some tags from Accession - Michael

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