Difference between revisions of "WBConfCall 2012.02.02-Agenda and Minutes"
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</pre> | </pre> | ||
− | ==== Removal of Accession_number XREF from the Homology_group - Michael ==== | + | ==== Removal of Accession_number XREF from the Homology_group - Michael ==== |
+ | <pre> | ||
+ | I would like to remove the Accession_number XREF from the Homology_group | ||
+ | ?Homology_group Evidence #Evidence | ||
+ | Title ?Text | ||
+ | DB_info Database ?Database ?Database_field ?Accession_number XREF Homology_group | ||
+ | Group_type UNIQUE COG COG_type #Homology_type | ||
+ | COG_code #COG_codes | ||
+ | eggNOG eggNOG_type #Homology_type | ||
+ | eggNOG_code #COG_codes | ||
+ | InParanoid_group | ||
+ | OrthoMCL_group //erich Nov06 | ||
+ | GO_term ?GO_term XREF Homology_group | ||
+ | Protein ?Protein XREF Homology_group | ||
+ | Remark ?Text #Evidence | ||
+ | |||
+ | |||
+ | and the Homology_group tag from the Accession_number: | ||
+ | ?Accession_number Entry Sequence ?Sequence | ||
+ | CDS ?CDS | ||
+ | Transcript ?Transcript | ||
+ | Pseudogene ?Pseudogene | ||
+ | Protein ?Protein | ||
+ | Motif ?Motif | ||
+ | Clone ?Clone // added [031120 krb] | ||
+ | Homology_group // added [031120 krb] | ||
+ | 3d_data ?3d_data | ||
+ | Structure_data ?Structure_data | ||
+ | Web_location ?Database // use for WWW display | ||
+ | |||
+ | </pre> | ||
==== ?Transposon, Corresponding_CDS and Corresponding_Pseudogene - Paul ===== | ==== ?Transposon, Corresponding_CDS and Corresponding_Pseudogene - Paul ===== | ||
==== Homology_group and Accession_number, removal of XREF between classes and some tags from Accession - Michael ==== | ==== Homology_group and Accession_number, removal of XREF between classes and some tags from Accession - Michael ==== |
Revision as of 11:45, 2 February 2012
Contents
- 1 Agenda and Minutes for the Conference Call 2nd February 2012
- 1.1 Agenda
- 1.1.1 ACeDB models
- 1.1.1.1 Unified Interaction model - Chris & Kimberly
- 1.1.1.2 Legacy data incorporation (Variation Phenotype_info) - Karen
- 1.1.1.3 New Homology type nemNOG - Michael
- 1.1.1.4 Re-homing of Rescued_by_Transgene from Variation -> Phenotype_info - Karen
- 1.1.1.5 Removal of Accession_number XREF from the Homology_group - Michael
- 1.1.1.6 ?Transposon, Corresponding_CDS and Corresponding_Pseudogene - Paul =
- 1.1.1.7 Homology_group and Accession_number, removal of XREF between classes and some tags from Accession - Michael
- 1.1.1 ACeDB models
- 1.1 Agenda
Agenda and Minutes for the Conference Call 2nd February 2012
Agenda
ACeDB models
Unified Interaction model - Chris & Kimberly
Legacy data incorporation (Variation Phenotype_info) - Karen
//////////////////////////////////////////// // // ?Phenotype_info Class // //////////////////////////////////////////// #Phenotype_info add -> Ease_of_scoring UNIQUE ES0_Impossible_to_score ES1_Very_hard_to_score ES2_Difficult_to_score ES3_Easy_to_score //////////////////////////////////////////// // //Variation class // /////////////////////////////////////////// ?Variation Evidence #Evidence Genetics Gene_class ?Gene_class XREF Variation add -> Mating_efficiency Male UNIQUE ME0_Mating_not_successful ME1_Mating_rarely_successful ME2_Mating_usually_successful ME3_Mating_always_successful Hermaphrodite UNIQUE HE0_Mating_not_successful HE1_Mating_rarely_successful HE2_Mating_usually_successful HE3_Mating_always_successful
New Homology type nemNOG - Michael
#Homology_type KOG TWOG FOG LSE NOG //eggNOG - standard cluster euNOG //eggNOG - eukaryote cluster meNOG //eggNOG - metazoan cluster COG //eggNOG - COG cluster // MH6 WS228 nemNOG //eggNOG - nematode clusters
Re-homing of Rescued_by_Transgene from Variation -> Phenotype_info - Karen
//////////////////////////////////////////// // // ?Phenotype_info Class // //////////////////////////////////////////// #Phenotype_info add -> Rescued_by_transgene ?Transgene ////////////////////////////////////////////////////////////////////////////////////////////// // //Variation class // ////////////////////////////////////////////////////////////////////////////////////////////// ?Variation Evidence #Evidence Genetics Gene_class ?Gene_class XREF Variation Remove -> Rescued_by_transgene ?Transgene /////////////////////////////////////////////////////////////////////////////// // // Transgene class from Wen Chen 12/00 // Reorganised by Karen/Wen May 2011 // /////////////////////////////////////////////////////////////////////////////// ?Transgene Used_for Remove -> Rescue ?Variation XREF Rescued_by_Transgene
Removal of Accession_number XREF from the Homology_group - Michael
I would like to remove the Accession_number XREF from the Homology_group ?Homology_group Evidence #Evidence Title ?Text DB_info Database ?Database ?Database_field ?Accession_number XREF Homology_group Group_type UNIQUE COG COG_type #Homology_type COG_code #COG_codes eggNOG eggNOG_type #Homology_type eggNOG_code #COG_codes InParanoid_group OrthoMCL_group //erich Nov06 GO_term ?GO_term XREF Homology_group Protein ?Protein XREF Homology_group Remark ?Text #Evidence and the Homology_group tag from the Accession_number: ?Accession_number Entry Sequence ?Sequence CDS ?CDS Transcript ?Transcript Pseudogene ?Pseudogene Protein ?Protein Motif ?Motif Clone ?Clone // added [031120 krb] Homology_group // added [031120 krb] 3d_data ?3d_data Structure_data ?Structure_data Web_location ?Database // use for WWW display