Difference between revisions of "WBConfCall 2012.02.02-Agenda and Minutes"

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(Created page with '= Agenda and Minutes for the Conference Call 2nd February 2012 = == Agenda == === ACeDB models === ==== Unified Interaction model - Chris & Kimberly ==== ==== Legacy data incorp…')
 
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==== New Homology type nemNOG - Michael ====
 
==== New Homology type nemNOG - Michael ====
 +
<pre>
 +
#Homology_type KOG
 +
              TWOG
 +
              FOG
 +
              LSE
 +
              NOG  //eggNOG - standard cluster
 +
              euNOG //eggNOG - eukaryote cluster
 +
              meNOG //eggNOG - metazoan cluster
 +
      COG  //eggNOG - COG cluster // MH6 WS228
 +
              nemNOG //eggNOG - nematode clusters
 +
</pre>
  
 
==== Re-homing of Rescued_by_Transgene from Variation -> Phenotype_info - Karen ====
 
==== Re-homing of Rescued_by_Transgene from Variation -> Phenotype_info - Karen ====

Revision as of 11:43, 2 February 2012

Agenda and Minutes for the Conference Call 2nd February 2012

Agenda

ACeDB models

Unified Interaction model - Chris & Kimberly

Legacy data incorporation (Variation Phenotype_info) - Karen

////////////////////////////////////////////
 //
// ?Phenotype_info Class
//
////////////////////////////////////////////

#Phenotype_info
add ->       Ease_of_scoring  UNIQUE ES0_Impossible_to_score
                                    ES1_Very_hard_to_score
                                    ES2_Difficult_to_score
                                    ES3_Easy_to_score


////////////////////////////////////////////
//
//Variation class
//
///////////////////////////////////////////
?Variation Evidence #Evidence
         Genetics Gene_class ?Gene_class XREF Variation
 add ->        Mating_efficiency  Male  UNIQUE ME0_Mating_not_successful
                                               ME1_Mating_rarely_successful
                                               ME2_Mating_usually_successful
                                               ME3_Mating_always_successful

                                  Hermaphrodite UNIQUE
HE0_Mating_not_successful
HE1_Mating_rarely_successful
HE2_Mating_usually_successful
HE3_Mating_always_successful

New Homology type nemNOG - Michael

#Homology_type KOG
               TWOG
               FOG
               LSE
               NOG   //eggNOG - standard cluster
               euNOG //eggNOG - eukaryote cluster
               meNOG //eggNOG - metazoan cluster
	       COG   //eggNOG - COG cluster // MH6 WS228
               nemNOG //eggNOG - nematode clusters

Re-homing of Rescued_by_Transgene from Variation -> Phenotype_info - Karen

Removal of Accession_number XREF from the Homology_group - Michael =

?Transposon, Corresponding_CDS and Corresponding_Pseudogene - Paul =

Homology_group and Accession_number, removal of XREF between classes and some tags from Accession - Michael

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