Difference between revisions of "WBConfCall 2011.05.19-Agenda and Minutes"

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(Created page with '== Conference call 19th May 2011 == '''Apologies for absence:''' Paul S. - GO meeting Kimberly - GO meeting Start 16:33 GMT '''1)''' EggNog discussion and model change impli…')
 
 
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== Conference call 19th May 2011 ==
 
== Conference call 19th May 2011 ==
  
'''Apologies for absence:'''
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=== Apologies for absence: ===
  
 
Paul S. - GO meeting
 
Paul S. - GO meeting
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Start 16:33 GMT
 
Start 16:33 GMT
  
'''1)''' EggNog discussion and model change implications for caltech - Michael
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=== eggNOG discussion and model change implications for CalTech - Michael ===
  
 
Michael proposed 2 options but didn't get a preference from caltech
 
Michael proposed 2 options but didn't get a preference from caltech
  
Option 2 is clean but requires Caltech to modify their postgress->.ace dumping code.
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Option 2 is clean but requires CalTech to modify their postgress->.ace dumping code.
  
 
Raymond couldn't see a problem but deferred to Kimberly and Juancarlos to look into this proposal.
 
Raymond couldn't see a problem but deferred to Kimberly and Juancarlos to look into this proposal.
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Will revisit at the next conference call.
 
Will revisit at the next conference call.
  
 
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=== ''Steinernema carpocapsae'' - integration - open ===
'''2)''' ''Steinernema carpocapsae'' - integration - open
 
  
  
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'''3)''' Submissions / suggestions for WormBase plenary talk. The talk is short: 7 minutes. What data and curatorial accomplishments do we want to emphasize? - Todd
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=== Submissions / suggestions for WormBase plenary talk. ===
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The talk is short: 7 minutes. What data and curatorial accomplishments do we want to emphasize? - Todd
  
 
Todd has a 1st session talk (7min)
 
Todd has a 1st session talk (7min)
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'''4)''' Prep for workshop; slide templates, etc. - Todd
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=== Prep for workshop; slide templates, etc. - Todd ===
  
 
Short slots so need consistency between presentations.
 
Short slots so need consistency between presentations.
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'''5)''' New website timeline - Todd
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=== New website timeline - Todd ===
  
 
Todd and Co. wrapping up the final UI elements:
 
Todd and Co. wrapping up the final UI elements:
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'''6)''' AOB
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=== AOB ===
  
  
'''A)''' Todd - Blast indices include blasn against "genes"
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==== Todd - Blast indices include BLASTN against "genes" ====
  
 
It appears that this is a blast against genomic clones and not genes.
 
It appears that this is a blast against genomic clones and not genes.
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'''B)''' Sanger email contact.
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==== Sanger email contact. ====
  
wormbase@sanger.ac.uk contact list should be seen as an outgoing list.
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<strike>wormbase@sanger.ac.uk</strike> contact list should be seen as an outgoing list.
  
 
People should use the new hinxton@wormbase.org address for contact
 
People should use the new hinxton@wormbase.org address for contact
  
 
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End 17:05 GMT

Latest revision as of 11:14, 21 December 2011

Conference call 19th May 2011

Apologies for absence:

Paul S. - GO meeting

Kimberly - GO meeting

Start 16:33 GMT

eggNOG discussion and model change implications for CalTech - Michael

Michael proposed 2 options but didn't get a preference from caltech

Option 2 is clean but requires CalTech to modify their postgress->.ace dumping code.

Raymond couldn't see a problem but deferred to Kimberly and Juancarlos to look into this proposal.

Michael also want to remove unused database connections from the models

           HOPS_group    // Sonnhammer
           RIO_group     // Eddy

Will revisit at the next conference call.

Steinernema carpocapsae - integration - open

No specifics could be discussed as Paul S. and Erich are the main players.

Need to re-visit and improve wiki document to decide policy for accepting submissions.

[Genome_Standards]


Submissions / suggestions for WormBase plenary talk.

The talk is short: 7 minutes. What data and curatorial accomplishments do we want to emphasize? - Todd

Todd has a 1st session talk (7min)

Could curators send him specifics on data/curational achievements you feel should be highlighted.

Slides/figures/stats welcome.


Prep for workshop; slide templates, etc. - Todd

Short slots so need consistency between presentations.

Raymond volunteered to prepare and circulate a template.

Should think about getting presentations prepared for review in the next couple of weeks.

Raymond - There is still time to iron out issues / content. Wen and Ruihua to prep slides asap.

Todd enquired about post IWM meeting as we aren't having one before. Planned for the afternoon of the last day of the IWM (Paul S. to sort room??)


New website timeline - Todd

Todd and Co. wrapping up the final UI elements:

Registration
Look + feel
Back end code refinements
Hosting Environment

Full Production Env. coming soon to allow for curator testing to identify issues/refinements/features list.

Todd hopes for a full "Laundry List" of issues so that the web team can hammer through them.

Beta release scheduled for IWM so we can make most of user feedback during meeting.

Chris proposed Beta release just prior to IWM to prep community for face to face feedback at meeting.

Abby a little concerned about time frame as testing is being conducted and this will eat into time left before meeting.


AOB

Todd - Blast indices include BLASTN against "genes"

It appears that this is a blast against genomic clones and not genes.

Re-label for time being if it works.

Todd emailed sanger about this issue as well as a few other things about blast.

Can Sanger provide EST sets with each build.

Sanger already has the data and will work to supply these using/adapting some of the code supplied to get the expected format.

Offline discussion will ensue.


Sanger email contact.

wormbase@sanger.ac.uk contact list should be seen as an outgoing list.

People should use the new hinxton@wormbase.org address for contact

End 17:05 GMT