Difference between revisions of "UserGuide:WormMine"

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== Template Query ==
 
== Template Query ==
WormMine provides a library of public template queries - predefined queries designed to perform a particular task. Each one has a description and a form to fill in. For example, there are templates to find GO annotation for a gene, to retrieve protein-protein interactions or protein structures.
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WormMine provides a library of public template queries - predefined queries designed to perform a particular task. Each one has a description and a form to fill in. For example, there are templates to find genes annotated with a specific GO (GeneOntology) term, genes expressed in a specific tissue (anatomy term).
  
You can find all FlyMine templates on the templates page, accessible via the toolbar on any page. Here you can search the titles and descriptions of all templates.
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You can find all WormMine templates on the templates page, accessible via the toolbar on any page. Here you can search the titles and descriptions of all templates.
  
 
We can add templates to this page at any time - it only takes a few minutes - so if you have a suggestion, let us know!
 
We can add templates to this page at any time - it only takes a few minutes - so if you have a suggestion, let us know!

Revision as of 22:26, 30 May 2013

(modified from FlyMine tour)

WormMine is an integrated search tool of WormBase data built with the Intermine data warehouse platform.


Search: type in an identifier or keyword and GO.

Templates: 'canned' queries that others have found useful. The easiest way to learn WormMine query is to modify and customize existing templates. You can create and save your own templates after logging in.

Lists: operate on whole lists of data at once. You can upload lists or save them from results tables. Useful public lists are provided.

QueryBuilder: create custom queries and edit existing templates. QuiryBuilder is very powerful but may demand some learning.

MyMine: create an account to save your own queries, bags and templates, as well as marking public templates as favorites.


Template Query

WormMine provides a library of public template queries - predefined queries designed to perform a particular task. Each one has a description and a form to fill in. For example, there are templates to find genes annotated with a specific GO (GeneOntology) term, genes expressed in a specific tissue (anatomy term).

You can find all WormMine templates on the templates page, accessible via the toolbar on any page. Here you can search the titles and descriptions of all templates.

We can add templates to this page at any time - it only takes a few minutes - so if you have a suggestion, let us know!

Lists

QueryBuilder

MyMine