Difference between revisions of "UserGuide:SimpleMine"
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− | SimpleMine Users' Guide | + | == SimpleMine Users' Guide == |
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+ | SimpleMine is designed for biologists who want to get essential information for a list of genes without any command-line or programming skill. We consider the following as "essential information" based on user feedback. Please feel free to contact us if you want to include more information in the list. | ||
+ | |||
+ | '''Names, Identifiers, Sequences, Species''' | ||
+ | |||
+ | WormBase Gene ID | ||
+ | |||
+ | Public Name | ||
+ | |||
+ | Species | ||
+ | |||
+ | Sequence Name | ||
+ | |||
+ | Other Name | ||
+ | |||
+ | Transcript | ||
+ | |||
+ | Operon | ||
+ | |||
+ | WormPep | ||
+ | |||
+ | Protein Domain | ||
+ | |||
+ | UniProt | ||
+ | |||
+ | Reference UniProt ID | ||
+ | |||
+ | TreeFam | ||
+ | |||
+ | RefSeq_mRNA | ||
+ | |||
+ | RefSeq_protein | ||
+ | |||
+ | |||
+ | '''Genetics, Phenotypes, Interactions''' | ||
+ | |||
+ | Genetic Map Position | ||
+ | |||
+ | RNAi Phenotype Observed | ||
+ | |||
+ | Allele Phenotype Observed | ||
+ | |||
+ | Sequenced Allele | ||
+ | |||
+ | Interacting Gene | ||
+ | |||
+ | |||
+ | '''Expression''' | ||
+ | |||
+ | Expr_pattern Tissue | ||
+ | |||
+ | Genomic Study Tissue | ||
+ | |||
+ | Expr_pattern LifeStage | ||
+ | |||
+ | Genomic Study LifeStage | ||
+ | |||
+ | Expression Cluster Summary | ||
+ | |||
+ | |||
+ | '''Human Orthologs and Disease''' | ||
+ | |||
+ | Disease Info | ||
+ | |||
+ | Human Ortholog | ||
+ | |||
+ | |||
+ | '''Functional Annotation and References''' | ||
+ | |||
+ | Gene Ontology Association | ||
+ | |||
+ | Concise Description | ||
+ | |||
+ | Automated Description | ||
+ | |||
+ | Reference |
Revision as of 23:07, 1 July 2020
SimpleMine Users' Guide
SimpleMine is designed for biologists who want to get essential information for a list of genes without any command-line or programming skill. We consider the following as "essential information" based on user feedback. Please feel free to contact us if you want to include more information in the list.
Names, Identifiers, Sequences, Species
WormBase Gene ID
Public Name
Species
Sequence Name
Other Name
Transcript
Operon
WormPep
Protein Domain
UniProt
Reference UniProt ID
TreeFam
RefSeq_mRNA
RefSeq_protein
Genetics, Phenotypes, Interactions
Genetic Map Position
RNAi Phenotype Observed
Allele Phenotype Observed
Sequenced Allele
Interacting Gene
Expression
Expr_pattern Tissue
Genomic Study Tissue
Expr_pattern LifeStage
Genomic Study LifeStage
Expression Cluster Summary
Human Orthologs and Disease
Disease Info
Human Ortholog
Functional Annotation and References
Gene Ontology Association
Concise Description
Automated Description
Reference