Difference between revisions of "UserGuide:SimpleMine"

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SimpleMine Users' Guide
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== SimpleMine Users' Guide ==
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SimpleMine is designed for biologists who want to get essential information for a list of genes without any command-line or programming skill. We consider the following as "essential information" based on user feedback. Please feel free to contact us if you want to include more information in the list. 
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'''Names, Identifiers, Sequences, Species'''
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WormBase Gene ID
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Public Name
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Species
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Sequence Name
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Other Name
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Transcript
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Operon
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WormPep
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Protein Domain
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UniProt
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Reference UniProt ID
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TreeFam
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RefSeq_mRNA
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RefSeq_protein
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'''Genetics, Phenotypes, Interactions'''
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Genetic Map Position
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RNAi Phenotype Observed
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Allele Phenotype Observed
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Sequenced Allele
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Interacting Gene
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'''Expression'''
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Expr_pattern Tissue
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Genomic Study Tissue
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Expr_pattern LifeStage
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Genomic Study LifeStage
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Expression Cluster Summary
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'''Human Orthologs and Disease'''
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Disease Info
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Human Ortholog
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'''Functional Annotation and References'''
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Gene Ontology Association
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Concise Description
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Automated Description
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Reference

Revision as of 23:07, 1 July 2020

SimpleMine Users' Guide

SimpleMine is designed for biologists who want to get essential information for a list of genes without any command-line or programming skill. We consider the following as "essential information" based on user feedback. Please feel free to contact us if you want to include more information in the list.

Names, Identifiers, Sequences, Species

WormBase Gene ID

Public Name

Species

Sequence Name

Other Name

Transcript

Operon

WormPep

Protein Domain

UniProt

Reference UniProt ID

TreeFam

RefSeq_mRNA

RefSeq_protein


Genetics, Phenotypes, Interactions

Genetic Map Position

RNAi Phenotype Observed

Allele Phenotype Observed

Sequenced Allele

Interacting Gene


Expression

Expr_pattern Tissue

Genomic Study Tissue

Expr_pattern LifeStage

Genomic Study LifeStage

Expression Cluster Summary


Human Orthologs and Disease

Disease Info

Human Ortholog


Functional Annotation and References

Gene Ontology Association

Concise Description

Automated Description

Reference