Difference between revisions of "User:Mh6"
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| − | Michael Han from the Sanger Institute in Cambridge, UK. | + | Michael Han from the Sanger Institute in Cambridge, UK. |
| − | Responsible for orthology predictions and the Sanger mirror. | + | Responsible for orthology predictions and the Sanger mirror. |
| − | === short version === | + | === short version === |
| − | I am working in the wormbase group at the Sanger Institute and at the moment responsible for: | + | I am working in the wormbase group at the Sanger Institute and at the moment responsible for: |
| − | * having some look on our wiki edits | + | *having some look on our wiki edits |
| − | * our local wormbook mirror at http://wormbook.sanger.ac.uk | + | *our local wormbook mirror at http://wormbook.sanger.ac.uk |
| − | * our local wormbase mirror at http://wormbase.sanger.ac.uk | + | *our local wormbase mirror at http://wormbase.sanger.ac.uk |
| − | * refactoring / rewriting pipeline scripts | + | *refactoring / rewriting pipeline scripts |
| − | * our local Perl installation for the pipeline | + | *our local Perl installation for the pipeline |
| − | * our worm EnsEMBL databases (COMPARA and CORE) | + | *our worm EnsEMBL databases (COMPARA and CORE) |
| − | === interests === | + | === interests === |
| − | ==== Biology related ==== | + | ==== Biology related ==== |
| − | * cDNAs / ESTs from my previous work at the German cDNA consortium | + | *cDNAs / ESTs from my previous work at the German cDNA consortium |
| − | * transcriptome analysis of Pongo pygmaeus (Orangutan) | + | *transcriptome analysis of Pongo pygmaeus (Orangutan) |
| − | * SNP association studies for complex diseaes (like asthma) | + | *SNP association studies for complex diseaes (like asthma) |
| − | * lab automatition (Beckmann/Tecan) | + | *lab automatition (Beckmann/Tecan) |
| − | * antimicrobial peptides | + | *antimicrobial peptides |
| − | ==== IT related ==== | + | ==== IT related ==== |
| − | * postgeSQL (preferred) , mySQL / Oracle / ObjectStore (if it has to be) | + | *postgeSQL (preferred) , mySQL / Oracle / ObjectStore (if it has to be) |
| − | * Ruby / Perl / Python (mainly) | + | *Ruby / Perl / Python (mainly) |
| − | * Java / C++ / C | + | *Java / C++ / C |
| − | * SML / OCAML (touched it during some Informatics courses) | + | *SML / OCAML (touched it during some Informatics courses) |
| − | * FreeBSD / GNU-Darwin / Linux on Power / BioRuby / Scientific Ruby / OpenSputnik | + | *FreeBSD / GNU-Darwin / Linux on Power / BioRuby / Scientific Ruby / OpenSputnik |
| + | |||
| + | ==== other things === | ||
| + | proposal for GFF3 alignment format: [GFF3specProposal] | ||
Revision as of 10:25, 30 April 2008
Michael Han from the Sanger Institute in Cambridge, UK.
Responsible for orthology predictions and the Sanger mirror.
short version
I am working in the wormbase group at the Sanger Institute and at the moment responsible for:
- having some look on our wiki edits
- our local wormbook mirror at http://wormbook.sanger.ac.uk
- our local wormbase mirror at http://wormbase.sanger.ac.uk
- refactoring / rewriting pipeline scripts
- our local Perl installation for the pipeline
- our worm EnsEMBL databases (COMPARA and CORE)
interests
- cDNAs / ESTs from my previous work at the German cDNA consortium
- transcriptome analysis of Pongo pygmaeus (Orangutan)
- SNP association studies for complex diseaes (like asthma)
- lab automatition (Beckmann/Tecan)
- antimicrobial peptides
- postgeSQL (preferred) , mySQL / Oracle / ObjectStore (if it has to be)
- Ruby / Perl / Python (mainly)
- Java / C++ / C
- SML / OCAML (touched it during some Informatics courses)
- FreeBSD / GNU-Darwin / Linux on Power / BioRuby / Scientific Ruby / OpenSputnik
= other things
proposal for GFF3 alignment format: [GFF3specProposal]
