Difference between revisions of "User:Mh6"
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| − | Michael | + | === summary === |
| + | Name: Michael Paulini | ||
| − | + | I am working in the wormbase group at the Wellcome Trust Genome campus in Cambridge,UK and responsible for: | |
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*refactoring / rewriting pipeline scripts | *refactoring / rewriting pipeline scripts | ||
| − | + | *our worm EnsEMBL pipeline/database | |
| − | *our worm EnsEMBL | ||
=== interests === | === interests === | ||
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*cDNAs / ESTs from my previous work at the German cDNA consortium | *cDNAs / ESTs from my previous work at the German cDNA consortium | ||
*transcriptome analysis of Pongo pygmaeus (Orangutan) | *transcriptome analysis of Pongo pygmaeus (Orangutan) | ||
| − | *SNP association studies for complex diseaes ( | + | *SNP association studies for complex diseaes (asthma) |
*lab automatition (Beckmann/Tecan) | *lab automatition (Beckmann/Tecan) | ||
| − | *antimicrobial peptides | + | *de-novo design of antimicrobial peptides |
==== IT related ==== | ==== IT related ==== | ||
| − | *postgeSQL (preferred) , mySQL / Oracle / ObjectStore | + | *postgeSQL (preferred) , mySQL / Oracle / ObjectStore |
| − | *Ruby / Perl / Python | + | *Ruby / Perl / Python |
*Java / C++ / C | *Java / C++ / C | ||
*SML / OCAML (touched it during some Informatics courses) | *SML / OCAML (touched it during some Informatics courses) | ||
| − | *FreeBSD / GNU-Darwin / Linux on | + | *FreeBSD / GNU-Darwin / Linux on PowerPC / BioRuby / Scientific Ruby / OpenSputnik |
| − | + | === other things === | |
proposal for GFF3 alignment format: [[GFF3specProposal|GFF3specProposal]] | proposal for GFF3 alignment format: [[GFF3specProposal|GFF3specProposal]] | ||
Latest revision as of 13:40, 15 August 2013
summary
Name: Michael Paulini
I am working in the wormbase group at the Wellcome Trust Genome campus in Cambridge,UK and responsible for:
- refactoring / rewriting pipeline scripts
- our worm EnsEMBL pipeline/database
interests
- cDNAs / ESTs from my previous work at the German cDNA consortium
- transcriptome analysis of Pongo pygmaeus (Orangutan)
- SNP association studies for complex diseaes (asthma)
- lab automatition (Beckmann/Tecan)
- de-novo design of antimicrobial peptides
- postgeSQL (preferred) , mySQL / Oracle / ObjectStore
- Ruby / Perl / Python
- Java / C++ / C
- SML / OCAML (touched it during some Informatics courses)
- FreeBSD / GNU-Darwin / Linux on PowerPC / BioRuby / Scientific Ruby / OpenSputnik
other things
proposal for GFF3 alignment format: GFF3specProposal
