Difference between revisions of "User:Mh6"

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(resurrection attempt)
 
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Responsible for orthology predictions and the Sanger mirror.
 
Responsible for orthology predictions and the Sanger mirror.
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=== short version ===
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I am working in the wormbase group at the Sanger Institute and at the moment responsible for:
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* having some look on our wiki edits
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* our local wormbook mirror at http://wormbook.sanger.ac.uk
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* our local wormbase mirror at http://wormbase.sanger.ac.uk
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* refactoring / rewriting pipeline scripts
 +
* our local Perl installation for the pipeline
 +
* our worm EnsEMBL databases (COMPARA and CORE)
 +
 +
=== interests ===
 +
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==== Biology related ====
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 +
* cDNAs / ESTs from my previous work at the German cDNA consortium
 +
* transcriptome analysis of Pongo pygmaeus (Orangutan)
 +
* SNP association studies for complex diseaes (like asthma)
 +
* lab automatition (Beckmann/Tecan)
 +
* antimicrobial peptides
 +
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==== IT related ====
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* postgeSQL (preferred) , mySQL / Oracle / ObjectStore (if it has to be)
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* Ruby / Perl / Python (mainly)
 +
* Java / C++ / C
 +
* SML / OCAML (touched it during some Informatics courses)
 +
* FreeBSD / GNU-Darwin / Linux on Power / BioRuby / Scientific Ruby / OpenSputnik

Revision as of 14:52, 24 September 2007

Michael Han from the Sanger Institute in Cambridge, UK.

Responsible for orthology predictions and the Sanger mirror.

short version

I am working in the wormbase group at the Sanger Institute and at the moment responsible for:

  • having some look on our wiki edits
  • our local wormbook mirror at http://wormbook.sanger.ac.uk
  • our local wormbase mirror at http://wormbase.sanger.ac.uk
  • refactoring / rewriting pipeline scripts
  • our local Perl installation for the pipeline
  • our worm EnsEMBL databases (COMPARA and CORE)

interests

Biology related

  • cDNAs / ESTs from my previous work at the German cDNA consortium
  • transcriptome analysis of Pongo pygmaeus (Orangutan)
  • SNP association studies for complex diseaes (like asthma)
  • lab automatition (Beckmann/Tecan)
  • antimicrobial peptides

IT related

  • postgeSQL (preferred) , mySQL / Oracle / ObjectStore (if it has to be)
  • Ruby / Perl / Python (mainly)
  • Java / C++ / C
  • SML / OCAML (touched it during some Informatics courses)
  • FreeBSD / GNU-Darwin / Linux on Power / BioRuby / Scientific Ruby / OpenSputnik