Difference between revisions of "User:Mh6"
From WormBaseWiki
Jump to navigationJump to search (resurrection attempt) |
|||
Line 2: | Line 2: | ||
Responsible for orthology predictions and the Sanger mirror. | Responsible for orthology predictions and the Sanger mirror. | ||
+ | |||
+ | === short version === | ||
+ | |||
+ | I am working in the wormbase group at the Sanger Institute and at the moment responsible for: | ||
+ | |||
+ | * having some look on our wiki edits | ||
+ | * our local wormbook mirror at http://wormbook.sanger.ac.uk | ||
+ | * our local wormbase mirror at http://wormbase.sanger.ac.uk | ||
+ | * refactoring / rewriting pipeline scripts | ||
+ | * our local Perl installation for the pipeline | ||
+ | * our worm EnsEMBL databases (COMPARA and CORE) | ||
+ | |||
+ | === interests === | ||
+ | |||
+ | ==== Biology related ==== | ||
+ | |||
+ | * cDNAs / ESTs from my previous work at the German cDNA consortium | ||
+ | * transcriptome analysis of Pongo pygmaeus (Orangutan) | ||
+ | * SNP association studies for complex diseaes (like asthma) | ||
+ | * lab automatition (Beckmann/Tecan) | ||
+ | * antimicrobial peptides | ||
+ | |||
+ | ==== IT related ==== | ||
+ | |||
+ | * postgeSQL (preferred) , mySQL / Oracle / ObjectStore (if it has to be) | ||
+ | * Ruby / Perl / Python (mainly) | ||
+ | * Java / C++ / C | ||
+ | * SML / OCAML (touched it during some Informatics courses) | ||
+ | * FreeBSD / GNU-Darwin / Linux on Power / BioRuby / Scientific Ruby / OpenSputnik |
Revision as of 14:52, 24 September 2007
Michael Han from the Sanger Institute in Cambridge, UK.
Responsible for orthology predictions and the Sanger mirror.
short version
I am working in the wormbase group at the Sanger Institute and at the moment responsible for:
- having some look on our wiki edits
- our local wormbook mirror at http://wormbook.sanger.ac.uk
- our local wormbase mirror at http://wormbase.sanger.ac.uk
- refactoring / rewriting pipeline scripts
- our local Perl installation for the pipeline
- our worm EnsEMBL databases (COMPARA and CORE)
interests
- cDNAs / ESTs from my previous work at the German cDNA consortium
- transcriptome analysis of Pongo pygmaeus (Orangutan)
- SNP association studies for complex diseaes (like asthma)
- lab automatition (Beckmann/Tecan)
- antimicrobial peptides
- postgeSQL (preferred) , mySQL / Oracle / ObjectStore (if it has to be)
- Ruby / Perl / Python (mainly)
- Java / C++ / C
- SML / OCAML (touched it during some Informatics courses)
- FreeBSD / GNU-Darwin / Linux on Power / BioRuby / Scientific Ruby / OpenSputnik