Difference between revisions of "Updating go.ace file"
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*Mapping from .obo file to .ace file: | *Mapping from .obo file to .ace file: | ||
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| + | ! .ace tag name | ||
| + | ! .obo tag name | ||
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| + | | 01 || DB_Object_ID | ||
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Revision as of 18:51, 12 June 2013
Updating the go.ace File - Script Specifications
- Output file: go.ace
WormBase ?GO_term Model:
?GO_term Name ?Text
Definition ?Text
Term ?Text
Type UNIQUE Biological_process
Cellular_component
Molecular_function
Child Instance ?GO_term XREF Instance_of
Component ?GO_term XREF Component_of
Parent Instance_of ?GO_term XREF Instance
Component_of ?GO_term XREF Component
Attributes_of Cell ?Cell XREF GO_term
Motif ?Motif XREF GO_term
Gene ?Gene XREF GO_term
CDS ?CDS XREF GO_term
Sequence ?Sequence XREF GO_term
Transcript ?Transcript XREF GO_term
Pseudogene ?Pseudogene XREF GO_term
Phenotype ?Phenotype XREF GO_term
Index Ancestor ?GO_term XREF Descendent
Descendent ?GO_term XREF Ancestor
Anatomy_term ?Anatomy_term XREF GO_term
Homology_group ?Homology_group XREF GO_term
Expr_pattern ?Expr_pattern XREF GO_term
Picture ?Picture XREF Cellular_component
Version UNIQUE Text UNIQUE Text
Sample GO term in .obo file:
[Term]
id: GO:0000003
name: reproduction
namespace: biological_process
alt_id: GO:0019952
alt_id: GO:0050876
def: "The production by an organism of new individuals that contain some portion of their genetic material inherited from that organism." [GOC:go_curators, GOC:isa_complete, ISBN:0198506732]
subset: goslim_generic
subset: goslim_pir
subset: goslim_plant
subset: gosubset_prok
synonym: "reproductive physiological process" EXACT []
xref: Wikipedia:Reproduction
is_a: GO:0008150 ! biological_process
- Mapping from .obo file to .ace file:
| .ace tag name | .obo tag name |
|---|---|
| 01 | DB_Object_ID |
