Difference between revisions of "Updating go.ace file"

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Line 11: Line 11:
 
               Term   ?Text
 
               Term   ?Text
 
               Type UNIQUE Biological_process
 
               Type UNIQUE Biological_process
  Cellular_component
+
                          Cellular_component
  Molecular_function
+
                          Molecular_function
        Child Instance ?GO_term XREF Instance_of
+
              Child Instance ?GO_term XREF Instance_of
        Component ?GO_term XREF Component_of
+
                        Component ?GO_term XREF Component_of
        Parent Instance_of ?GO_term XREF Instance
+
              Parent Instance_of ?GO_term XREF Instance
        Component_of ?GO_term XREF Component
+
                        Component_of ?GO_term XREF Component
        Attributes_of Cell ?Cell XREF GO_term
+
              Attributes_of Cell ?Cell XREF GO_term
                Motif ?Motif XREF GO_term
+
                                Motif ?Motif XREF GO_term
                Gene ?Gene XREF GO_term
+
                                Gene ?Gene XREF GO_term
                CDS ?CDS XREF GO_term
+
                                CDS ?CDS XREF GO_term
                Sequence ?Sequence XREF GO_term
+
                                Sequence ?Sequence XREF GO_term
                Transcript ?Transcript XREF GO_term
+
                                Transcript ?Transcript XREF GO_term
                Pseudogene ?Pseudogene XREF GO_term
+
                                Pseudogene ?Pseudogene XREF GO_term
                Phenotype ?Phenotype XREF GO_term
+
                                Phenotype ?Phenotype XREF GO_term
                Index Ancestor ?GO_term XREF Descendent
+
                                Index Ancestor ?GO_term XREF Descendent
                Descendent ?GO_term XREF Ancestor
+
                                        Descendent ?GO_term XREF Ancestor
                Anatomy_term ?Anatomy_term XREF GO_term
+
                                Anatomy_term ?Anatomy_term XREF GO_term
                Homology_group ?Homology_group XREF GO_term
+
                                Homology_group ?Homology_group XREF GO_term
                Expr_pattern ?Expr_pattern XREF GO_term
+
                                Expr_pattern ?Expr_pattern XREF GO_term
                Picture ?Picture XREF Cellular_component
+
                                Picture ?Picture XREF Cellular_component
        Version UNIQUE Text UNIQUE Text
+
                Version UNIQUE Text UNIQUE Text

Revision as of 18:38, 12 June 2013

Updating the go.ace File - Script Specifications

  • Output file: go.ace

WormBase ?GO_term Model:

    ?GO_term  Name	  ?Text
              Definition ?Text
              Term	  ?Text
              Type UNIQUE Biological_process
                          Cellular_component
                          Molecular_function
              Child	Instance	?GO_term	XREF	Instance_of
                       Component	?GO_term	XREF	Component_of
              Parent	Instance_of	?GO_term	XREF	Instance
                       Component_of	?GO_term	XREF	Component
              Attributes_of	Cell	?Cell	XREF	GO_term
                               Motif	?Motif	XREF	GO_term
                               Gene	?Gene	XREF	GO_term
                               CDS	?CDS	XREF	GO_term
                               Sequence	?Sequence	XREF	GO_term
                               Transcript	?Transcript	XREF	GO_term
                               Pseudogene	?Pseudogene	XREF	GO_term
                               Phenotype	?Phenotype	XREF	GO_term
                               Index	Ancestor	?GO_term	XREF	Descendent
                                       Descendent	?GO_term	XREF	Ancestor
                               Anatomy_term	?Anatomy_term	XREF	GO_term
                               Homology_group	?Homology_group	XREF	GO_term
                               Expr_pattern	?Expr_pattern	XREF	GO_term
                               Picture	?Picture	XREF	Cellular_component
               Version	UNIQUE	Text	UNIQUE	Text