Check
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Note
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Related Compile Step
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Are the correct ontology files in /u/l/w/databases?
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Mirror Ontology from Sanger
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Were the additional ontology files generated?
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Compile Ontology Resources
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Is the Multi-Ontology Search Running? URL: http://dev.wormbase.org/db/ontology/search
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ok
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Compile Ontology Resources
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Are the Ontology related summary pages working?
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ok
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Compile Ontology Resources
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Can you do a blast searches on the appropriate genomes? http://dev.wormbase.org/db/searches/blast_blat
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see matrix below
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Create Blast DBs
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Can you do a blat search on the appropriate genomes? http://dev.wormbase.org/db/searches/blast_blat
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see matrix below
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Create Blat DBs
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Does ePCR work? http://dev.wormbase.org/db/searches/epcr
|
ok
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Create ePRC DBs
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Are the appropriate tracks visible on the appropriate genomes http://dev.wormbase.org/db/seq/sequence?name=AC7;class=Sequence
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ok
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Load GFF DBs
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Is the EST aligner working? http://dev.wormbase.org/db/seq/aligner
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ok
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Load GFF DBs
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Is the Gene Details Page working? http://dev.wormbase.org/db/gene/gene?name=amx-2;class=Gene;details=1;dna=B0019.1
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ok
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Load GFF DBs
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Are the supplementary GFF tracks available http://dev.wormbase.org/db/gb2/gbrowse/c_elegans/
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ok
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Load GFF DBs
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Are the GBrowsers for the various species working http://dev.wormbase.org/db/gb2/gbrowse/
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see matrix below
|
Load GFF DBs
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Are the Genetic Limit Tracks available http://dev.wormbase.org/db/gb2/gbrowse/c_elegans/
|
ok
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Build and Load GFF Patches
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Are protein motifs available on the Protein page? http://dev.wormbase.org/db/gb2/gbrowse/c_elegans/
|
ok
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Build and Load GFF Patches
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Can you do a disease search? http://dev.wormbase.org/db/orthology/disease
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ok
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Compile orthology resources
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Can you list diseases for a gene? http://dev.wormbase.org/db/orthology/disease?related=WBGene00006803
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ok
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Compile orthology resources
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Can you list interactions? http://dev.wormbase.org/db/gene/interaction?list=WBGene00001188
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ok
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Compile interaction resources
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Can you list the available position matrices? http://dev.wormbase.org/db/seq/position_matrix?list=all
|
ok
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Compile position matrices
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Can you run a CLUSTAL search? http://dev.wormbase.org/db/seq/show_mult_align
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ok
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Update CLUSTAL database
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Is strain data available?
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ok
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run Strain update
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Are all the files for FTP present?
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ok
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