Difference between revisions of "Update Matrix WS220"
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|<i>C elegans</i> | |<i>C elegans</i> | ||
− | | | + | | genome:<br>gene: |
| ok | | ok | ||
|troubleshooting | |troubleshooting | ||
− | | http://dev.wormbase.org/db/gb2/gbrowse/c_elegans/<br>General Browser status: | + | | http://dev.wormbase.org/db/gb2/gbrowse/c_elegans/<br>General Browser status:<br>Supplementary Tracks:<br>Protein Motifs:<br>Genetic Limits: |
|- | |- | ||
|<i>C briggsae</i> | |<i>C briggsae</i> | ||
Line 64: | Line 64: | ||
| http://dev.wormbase.org/db/gb2/gbrowse/p_pacificus/#search<br>ok | | http://dev.wormbase.org/db/gb2/gbrowse/p_pacificus/#search<br>ok | ||
|- | |- | ||
+ | |<i>H contortus</i> | ||
+ | | ok | ||
+ | | ok | ||
+ | | N/A | ||
+ | | http://dev.wormbase.org/db/gb2/gbrowse/h_contortus/#search<br>ok | ||
+ | |- | ||
+ | |<i>C angaria</i> | ||
+ | | ok | ||
+ | | ok | ||
+ | | N/A | ||
+ | | http://dev.wormbase.org/db/gb2/gbrowse/c_angaria/#search<br>ok | ||
+ | |- | ||
+ | |||
+ | |||
+ | |||
+ | |||
{| cellpadding="5" border="1" | {| cellpadding="5" border="1" | ||
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! Related Compile Step | ! Related Compile Step | ||
|- | |- | ||
− | | Are the | + | | Are the phenotype tables rendering properly in the Gene Summary page? <br> http://dev.wormbase.org/db/gene/gene?name=WBGene00006763;class=Gene |
− | | | + | | ok |
− | | | + | | Compile Gene Resources |
|- | |- | ||
− | | | + | | Is the Multi-Ontology Search Running? <br> http://dev.wormbase.org/db/ontology/search |
− | + | | ok | |
| Compile Ontology Resources | | Compile Ontology Resources | ||
|- | |- | ||
− | | | + | | Are the Ontology related summary pages working?<br>Check off search results |
− | | | + | |GO: <br>----------------------<br>Phenotype: <br>---------------------<br>Anatomy: |
| Compile Ontology Resources | | Compile Ontology Resources | ||
− | |||
− | |||
− | |||
− | |||
|- | |- | ||
|Does ePCR work? <br> http://dev.wormbase.org/db/searches/epcr | |Does ePCR work? <br> http://dev.wormbase.org/db/searches/epcr | ||
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| ok | | ok | ||
| Load GFF DBs | | Load GFF DBs | ||
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|- | |- | ||
|Can you do a disease search?<br>http://dev.wormbase.org/db/orthology/disease | |Can you do a disease search?<br>http://dev.wormbase.org/db/orthology/disease |
Latest revision as of 16:43, 17 February 2011
Check | Note | Related Compile Step |
---|---|---|
Are the phenotype tables rendering properly in the Gene Summary page? http://dev.wormbase.org/db/gene/gene?name=WBGene00006763;class=Gene |
ok | Compile Gene Resources |
Is the Multi-Ontology Search Running? http://dev.wormbase.org/db/ontology/search |
ok | Compile Ontology Resources |
Are the Ontology related summary pages working? Check off search results |
GO: ---------------------- Phenotype: --------------------- Anatomy: |
Compile Ontology Resources |
Does ePCR work? http://dev.wormbase.org/db/searches/epcr |
ok | Create ePRC DBs |
Are the appropriate tracks visible on the appropriate genomes http://dev.wormbase.org/db/seq/sequence?name=AC7;class=Sequence |
ok | Load GFF DBs |
Is the EST aligner working? http://dev.wormbase.org/db/seq/aligner |
ok | Load GFF DBs |
Is the Gene Details Page working? http://dev.wormbase.org/db/gene/gene?name=amx-2;class=Gene;details=1;dna=B0019.1 |
ok | Load GFF DBs |
Can you do a disease search? http://dev.wormbase.org/db/orthology/disease |
ok | Compile orthology resources |
Can you list diseases for a gene? http://dev.wormbase.org/db/orthology/disease?related=WBGene00006803 |
ok | Compile orthology resources |
Can you list interactions? http://dev.wormbase.org/db/gene/interaction?list=WBGene00001188 |
ok | Compile interaction resources |
Can you list the available position matrices? http://dev.wormbase.org/db/seq/position_matrix?list=all |
ok | Compile position matrices |
Can you run a CLUSTAL search? http://dev.wormbase.org/db/seq/show_mult_align |
ok | Update CLUSTAL database |
Is strain data available? | ok | run Strain update |
Are all the files for FTP present? | ok |