Difference between revisions of "Update Matrix WS220"
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{| cellpadding="5" border="1" | {| cellpadding="5" border="1" | ||
Line 102: | Line 11: | ||
|- | |- | ||
|<i>C elegans</i> | |<i>C elegans</i> | ||
− | | | + | | genome:<br>gene: |
| ok | | ok | ||
|troubleshooting | |troubleshooting | ||
− | | http://dev.wormbase.org/db/gb2/gbrowse/c_elegans/<br> | + | | http://dev.wormbase.org/db/gb2/gbrowse/c_elegans/<br>General Browser status:<br>Supplementary Tracks:<br>Protein Motifs:<br>Genetic Limits: |
|- | |- | ||
|<i>C briggsae</i> | |<i>C briggsae</i> | ||
Line 154: | Line 63: | ||
| N/A | | N/A | ||
| http://dev.wormbase.org/db/gb2/gbrowse/p_pacificus/#search<br>ok | | http://dev.wormbase.org/db/gb2/gbrowse/p_pacificus/#search<br>ok | ||
+ | |- | ||
+ | |<i>H contortus</i> | ||
+ | | ok | ||
+ | | ok | ||
+ | | N/A | ||
+ | | http://dev.wormbase.org/db/gb2/gbrowse/h_contortus/#search<br>ok | ||
+ | |- | ||
+ | |<i>C angaria</i> | ||
+ | | ok | ||
+ | | ok | ||
+ | | N/A | ||
+ | | http://dev.wormbase.org/db/gb2/gbrowse/c_angaria/#search<br>ok | ||
+ | |- | ||
+ | |||
+ | |||
+ | |||
+ | |||
+ | |||
+ | {| cellpadding="5" border="1" | ||
+ | |- | ||
+ | ! Check | ||
+ | ! Note | ||
+ | ! Related Compile Step | ||
+ | |- | ||
+ | | Are the phenotype tables rendering properly in the Gene Summary page? <br> http://dev.wormbase.org/db/gene/gene?name=WBGene00006763;class=Gene | ||
+ | | ok | ||
+ | | Compile Gene Resources | ||
+ | |- | ||
+ | | Is the Multi-Ontology Search Running? <br> http://dev.wormbase.org/db/ontology/search | ||
+ | | ok | ||
+ | | Compile Ontology Resources | ||
+ | |- | ||
+ | | Are the Ontology related summary pages working?<br>Check off search results | ||
+ | |GO: <br>----------------------<br>Phenotype: <br>---------------------<br>Anatomy: | ||
+ | | Compile Ontology Resources | ||
+ | |- | ||
+ | |Does ePCR work? <br> http://dev.wormbase.org/db/searches/epcr | ||
+ | |ok | ||
+ | |Create ePRC DBs | ||
+ | |- | ||
+ | |Are the appropriate tracks visible on the appropriate genomes <br>http://dev.wormbase.org/db/seq/sequence?name=AC7;class=Sequence | ||
+ | | ok | ||
+ | | Load GFF DBs | ||
+ | |- | ||
+ | |Is the EST aligner working? <br>http://dev.wormbase.org/db/seq/aligner | ||
+ | | ok | ||
+ | | Load GFF DBs | ||
+ | |- | ||
+ | |Is the Gene Details Page working? <br>http://dev.wormbase.org/db/gene/gene?name=amx-2;class=Gene;details=1;dna=B0019.1 | ||
+ | | ok | ||
+ | | Load GFF DBs | ||
+ | |- | ||
+ | |Can you do a disease search?<br>http://dev.wormbase.org/db/orthology/disease | ||
+ | | ok | ||
+ | | Compile orthology resources | ||
+ | |- | ||
+ | |Can you list diseases for a gene?<br>http://dev.wormbase.org/db/orthology/disease?related=WBGene00006803 | ||
+ | | ok | ||
+ | | Compile orthology resources | ||
+ | |- | ||
+ | |Can you list interactions? <br>http://dev.wormbase.org/db/gene/interaction?list=WBGene00001188 | ||
+ | | ok | ||
+ | | Compile interaction resources | ||
+ | |- | ||
+ | |Can you list the available position matrices?<br>http://dev.wormbase.org/db/seq/position_matrix?list=all | ||
+ | | ok | ||
+ | | Compile position matrices | ||
+ | |- | ||
+ | |Can you run a CLUSTAL search? <br> http://dev.wormbase.org/db/seq/show_mult_align | ||
+ | | ok | ||
+ | | Update CLUSTAL database | ||
+ | |- | ||
+ | |Is strain data available? | ||
+ | | ok | ||
+ | | run Strain update | ||
+ | |- | ||
+ | |Are all the files for FTP present? | ||
+ | | ok | ||
+ | | <br> | ||
+ | |- |
Latest revision as of 16:43, 17 February 2011
Check | Note | Related Compile Step |
---|---|---|
Are the phenotype tables rendering properly in the Gene Summary page? http://dev.wormbase.org/db/gene/gene?name=WBGene00006763;class=Gene |
ok | Compile Gene Resources |
Is the Multi-Ontology Search Running? http://dev.wormbase.org/db/ontology/search |
ok | Compile Ontology Resources |
Are the Ontology related summary pages working? Check off search results |
GO: ---------------------- Phenotype: --------------------- Anatomy: |
Compile Ontology Resources |
Does ePCR work? http://dev.wormbase.org/db/searches/epcr |
ok | Create ePRC DBs |
Are the appropriate tracks visible on the appropriate genomes http://dev.wormbase.org/db/seq/sequence?name=AC7;class=Sequence |
ok | Load GFF DBs |
Is the EST aligner working? http://dev.wormbase.org/db/seq/aligner |
ok | Load GFF DBs |
Is the Gene Details Page working? http://dev.wormbase.org/db/gene/gene?name=amx-2;class=Gene;details=1;dna=B0019.1 |
ok | Load GFF DBs |
Can you do a disease search? http://dev.wormbase.org/db/orthology/disease |
ok | Compile orthology resources |
Can you list diseases for a gene? http://dev.wormbase.org/db/orthology/disease?related=WBGene00006803 |
ok | Compile orthology resources |
Can you list interactions? http://dev.wormbase.org/db/gene/interaction?list=WBGene00001188 |
ok | Compile interaction resources |
Can you list the available position matrices? http://dev.wormbase.org/db/seq/position_matrix?list=all |
ok | Compile position matrices |
Can you run a CLUSTAL search? http://dev.wormbase.org/db/seq/show_mult_align |
ok | Update CLUSTAL database |
Is strain data available? | ok | run Strain update |
Are all the files for FTP present? | ok |