Difference between revisions of "Update Matrix WS220"
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+ | ! GENOME MATRIX | ||
+ | |- | ||
+ | ! species | ||
+ | ! Blastn<br>http://dev.wormbase.org/db/searches/blast_blat | ||
+ | ! Blastp<br> | ||
+ | ! Blat<br> | ||
+ | ! GBrowse | ||
+ | |- | ||
+ | |<i>C elegans</i> | ||
+ | | ok | ||
+ | | ok | ||
+ | |troubleshooting | ||
+ | | http://dev.wormbase.org/db/gb2/gbrowse/c_elegans/<br>ok | ||
+ | |- | ||
+ | |<i>C briggsae</i> | ||
+ | | ok | ||
+ | | ok | ||
+ | | troubleshooting | ||
+ | | http://dev.wormbase.org/db/gb2/gbrowse/c_briggsae/?name=chrI%3A80000..120000<br> page didn't render | ||
+ | |- | ||
+ | |<i>C brenneri</i> | ||
+ | | ok | ||
+ | | ok | ||
+ | | N/A | ||
+ | | http://dev.wormbase.org/db/gb2/gbrowse/c_brenneri/#search<br>ok | ||
+ | |- | ||
+ | |<i>C remanei</i> | ||
+ | | ok | ||
+ | | ok | ||
+ | | N/A | ||
+ | | http://dev.wormbase.org/db/gb2/gbrowse/c_remanei/?name=CRE02801<br>ok | ||
+ | |- | ||
+ | |<i>C japonica</i> | ||
+ | | ok | ||
+ | | N/A | ||
+ | | N/A | ||
+ | | http://dev.wormbase.org/db/gb2/gbrowse/c_japonica/?name=Cjap_Contig2%3A140000..180000<br>ok | ||
+ | |- | ||
+ | |<i>M hapla</i> | ||
+ | | ok | ||
+ | | N/A | ||
+ | | N/A | ||
+ | | http://dev.wormbase.org/db/gb2/gbrowse/m_hapla/?name=MhA1_Contig0<br>ok | ||
+ | |- | ||
+ | |<i>M incognita</i> | ||
+ | | ok | ||
+ | | N/A | ||
+ | | N/A | ||
+ | |http://dev.wormbase.org/db/gb2/gbrowse/m_incognita/#search<br>ok | ||
+ | |- | ||
+ | |<i>B malayi</i> | ||
+ | | ok | ||
+ | | N/A | ||
+ | | N/A | ||
+ | |http://dev.wormbase.org/db/gb2/gbrowse/b_malayi/?name=Bmal_supercontig12883<br>ok | ||
+ | |- | ||
+ | |<i>P pacificus</i> | ||
+ | | ok | ||
+ | | ok | ||
+ | | N/A | ||
+ | | http://dev.wormbase.org/db/gb2/gbrowse/p_pacificus/#search<br>ok | ||
+ | |||
+ | |||
+ | |||
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Revision as of 22:39, 11 November 2010
GENOME MATRIX | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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species | Blastn http://dev.wormbase.org/db/searches/blast_blat |
Blastp |
Blat |
GBrowse | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
C elegans | ok | ok | troubleshooting | http://dev.wormbase.org/db/gb2/gbrowse/c_elegans/ ok | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
C briggsae | ok | ok | troubleshooting | http://dev.wormbase.org/db/gb2/gbrowse/c_briggsae/?name=chrI%3A80000..120000 page didn't render | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
C brenneri | ok | ok | N/A | http://dev.wormbase.org/db/gb2/gbrowse/c_brenneri/#search ok | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
C remanei | ok | ok | N/A | http://dev.wormbase.org/db/gb2/gbrowse/c_remanei/?name=CRE02801 ok | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
C japonica | ok | N/A | N/A | http://dev.wormbase.org/db/gb2/gbrowse/c_japonica/?name=Cjap_Contig2%3A140000..180000 ok | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
M hapla | ok | N/A | N/A | http://dev.wormbase.org/db/gb2/gbrowse/m_hapla/?name=MhA1_Contig0 ok | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
M incognita | ok | N/A | N/A | http://dev.wormbase.org/db/gb2/gbrowse/m_incognita/#search ok | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
B malayi | ok | N/A | N/A | http://dev.wormbase.org/db/gb2/gbrowse/b_malayi/?name=Bmal_supercontig12883 ok | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
P pacificus | ok | ok | N/A | http://dev.wormbase.org/db/gb2/gbrowse/p_pacificus/#search ok
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