Difference between revisions of "Update Matrix Template"
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Latest revision as of 18:14, 17 August 2010
| Check | Note | Related Compile Step |
|---|---|---|
| Have directories been created for given release in /u/l/w/databases? | Create Data Directories | |
| Has a wormbase_RELEASE directory been created in /u/l/w/acedb? | Mirror and Unpack AceDB files | |
| Is the Dev site running with the correct release number? | Mirror and Unpack AceDB files | |
| Is the wormbase pointer linked to the newly created acedb? | Mirror and Unpack AceDB files | |
| Is the database running and providing the correct version number? | Mirror and Unpack AceDB files | |
| Are the correct ontology files in /u/l/w/databases? | Mirror Ontology from Sanger | |
| Were the additional ontology files generated? | Compile Ontology Resources | |
| Is the Multi-Ontology Search Running? URL: http://dev.wormbase.org/db/ontology/search |
Compile Ontology Resources | |
| Are the Ontology related summary pages working? | Compile Ontology Resources | |
| Can you do a blast searches on the appropriate genomes? http://dev.wormbase.org/db/searches/blast_blat |
Create Blast DBs | |
| Can you do a blat search on the appropriate genomes? http://dev.wormbase.org/db/searches/blast_blat |
Create Blat DBs | |
| Does ePCR work? http://dev.wormbase.org/db/searches/epcr |
Create ePRC DBs | |
| Are the appropriate tracks visible on the appropriate genomes http://dev.wormbase.org/db/seq/sequence?name=AC7;class=Sequence |
Load GFF DBs | |
| Is the EST aligner working? http://dev.wormbase.org/db/seq/aligner |
Load GFF DBs | |
| Is the Gene Details Page working? http://dev.wormbase.org/db/gene/gene?name=amx-2;class=Gene;details=1;dna=B0019.1 |
Load GFF DBs | |
| Are the supplementary GFF tracks available http://dev.wormbase.org/db/seq/gbrowse/c_elegans/ |
Load GFF DBs | |
| Are the GBrowsers for the various species working http://dev.wormbase.org/db/seq/gbrowse/ |
Load GFF DBs | |
| Are the Genetic Limit Tracks available http://dev.wormbase.org/db/seq/gbrowse/c_elegans/ |
Build and Load GFF Patches | |
| Are protein motifs available on the Protein page? http://dev.wormbase.org/db/seq/protein?name=T21C12.1;class=Protein |
Build and Load GFF Patches | |
| Can you do a disease search? http://dev.wormbase.org/db/orthology/disease |
Compile orthology resources | |
| Can you list diseases for a gene? http://dev.wormbase.org/db/orthology/disease?related=WBGene00006803 |
Compile orthology resources | |
| Can you list interactions? http://dev.wormbase.org/db/gene/interaction?list=WBGene00001188 |
Compile interaction resources | |
| Can you list the available position matrices? http://dev.wormbase.org/db/seq/position_matrix?list=all |
Compile position matrices | |
| Can you run a CLUSTAL search? http://dev.wormbase.org/db/seq/show_mult_align |
Update CLUSTAL database |
