Difference between revisions of "Unused evidence"

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(Created page with "The following tags allow evidence (#Evidence in the model), but no occurrences in the WS244 actually had evidence. Possible candidates for removal in the new database? <now...")
 
(No difference)

Latest revision as of 18:21, 11 November 2014

The following tags allow evidence (#Evidence in the model), but no occurrences in the WS244 actually had evidence. Possible candidates for removal in the new database?

:anatomy-function/remark (10 values, 0 evidence)

:anatomy-term/term (6785 values, 0 evidence)
:anatomy-term/evidence EMPTY

:ao-code/remark EMPTY

:antibody/gene (2753 values, 0 evidence)
:antibody/remark (121 values, 0 evidence)
:antibody/summary (2450 values, 0 evidence)

:cell/other-name (919 values, 0 evidence -- Raymond suggests killing this class?)
:cell/main-name (2939 values, 0 evidence)
:cell/remark (900 values, 0 evidence)
:cell/go-term EMPTY

:cell-group/main-name (532 values, 0 evidence)
:cell-group/other-name (25 values, 0 evidence)
:cell-group/remark (98 values, 0 evidence)

:cds/corresponding-protein (201723 values, 0 evidence)    *****
:cds/concise-description EMPTY
:cds/detailed-description EMPTY
:cds/db-remark (130412 values, 0 evidence) ****

:clone/evidence EMPTY

:condition/remark (236 values, 0 evidence)

:do-term/worm-disease-model EMPTY

:expression-cluster/anatomy-term (142 values, 0 evidence)
:expression-cluster/remark (402 values, 0 evidence)
:expression-cluster/expr-pattern (98 present, 0 evidence)
:expression-cluster/gene (599499 values, 0 evidence) ****
:expression-cluster/sage-tag EMPTY

:expr-pattern/gene (42983 values, 0 evidence)
:expr-pattern/remark (10483 values, 0 evidence)
:expr-pattern/associated-feature (54 values, 0 evidence)

:expr-profile/remark (2353 values, 0 evidence)

;; NB :feature/associated-with-gene DOES have evidence...
:feature/associated-with-cds (7676 values, 0 evidence)
:feature/associated-with-pseudogene (16 values, 0 evidence)
:feature/associated-with-variation EMPTY
:feature/associated-with-operon (1 value, 0 evidence)
:feature/associated-with-transposon EMPTY
:feature/associated-with-transcript (8165 values, 0 evidence)
:feature/score (394711 values, 0 evidence) ****


:gene/corresponding-cds         (202067 values, 0 evidence) ****
:gene/corresponding-transcript  (239936 values, 0 evidence) ****
:gene/corresponding-pseudogene  (3738 values, 0 evidence)
:gene/corresponding-transposon  (364 values, 0 evidence)
:gene/concise-description (6168 values, 0 evidence)
:gene/detailed-description EMPTY
:gene/suppressed   (361 present, 0 evidence)

:go-code/remark EMPTY

:homology-group/evidence EMPTY
:homology-group/remark (63009 values, 0 evidence)

:interaction/interaction-summary (18885 values, 0 evidence)

:lab-location/remark EMPTY

:life-stage/remark (8 values, 0 evidence)

:locus/evidence EMPTY
:locus/remark EMPTY
:locus/other-name EMPTY

:mass-spec-experiment/remark (41 values, 0 evidence)

:microarray/remark (5 values, 0 evidence)

:microarray-data/remark (3400214 values, 0 evidence)

:microarray-experiment/remark (5311 values, 0 evidence)

:microarray-results/cds (565920 values, 0 evidence) ****
:microarray-results/remark  EMPTY
:microarray-results/pseudogene (6257 values, 0 evidence)
:microarray-results/transcript (653674 values, 0 evidence) ****
:microarray-results/gene (494487 values, 0 evidence) ****

:molecule/remark EMPTY
:molecule/rnai (65 values, 0 evidence)
:molecule/molecule-use (158 values, 0 evidence)

:motif/db-remark EMPTY
:motif/go-term (27856 values, 0 evidence)

:movie/remark (766 values, 0 evidence)

:oligo-set/remark (5092 values, 0 evidence)
:oligo-set/overlaps-cds (538652 values, 0 evidence) ******
:oligo-set/overlaps-pseudogene (5372 values, 0 evidence)
:oligo-set/overlaps-transcript (619716 values, 0 evidence) *****

:paper/email EMPTY
:paper/species EMPTY
:paper/not-person (2417 values, 0 evidence)
:paper/remark (15 values, 0 evidence)
:paper/directory EMPTY
:paper/person (118143 values, 0 evidence) ****

:phenotype/assay (49 values, 0 evidence)
:phenotype/do-term EMPTY
:phenotype/go-term (199 values, 0 evidence)
:phenotype/short-name EMPTY
:phenotype/primary-name (2175 values, 0 evidence)
:phenotype/remark (2 values, 0 evidence)

:phenotype-info/not EMPTY
:phenotype-info/quantity (2888 values, 0 evidence)
:phenotype-info/quantity-description (573 values, 0 evidence)
:phenotype-info/mixed EMPTY

:picture/evidence EMPTY
:picture/remark (26352 values, 0 evidence)

:position-matrix/transcription-factor (141 values, 0 evidence)
:position-matrix/bound-by-gene-product (30 values, 0 evidence)
:position-matrix/consensus (5380 values, 0 evidence)

:protein/remark (613 values, 0 evidence)

:pseudogene/db-remark (3948 values, 0 evidence)
:pseudogene/concise-description EMTPY
:pseudogene/detailed-description EMPTY
:pseudogene/provisional-description EMPTY
:pseudogene/rna-pseudogene (2311 values, 0 evidence)
:pseudogene/matching-cdna (164 values, 0 evidence)

:rearrangement/gene-inside (1103 values, 0 evidence)
:rearrangement/gene-outside (716 values, 0 evidence)

:reconstruction/remark EMPTY

:reference/remark EMPTY

:rnai/remark (90172 values, 0 evidence)

:sage-experiment/remark EMPTY

:sage-tag/evidence EMPTY
:sage-tag/remark EMPTY

:sequence/go-term EMPTY

:sequence-collection/dead (1 present, 0 evidence)
:sequence-collection/suppressed (1 present, 0 evidence)

:sk-map/remark (11675 values, 0 evidence)

:strain/other-name (839 values, 0 evidence)

:structure-data/remark EMPTY

:transcript/corresponding-cds (205965 values, 0 evidence)
:transcript/concise-description EMPTY
:transcript/detailed-description EMPTY
:transcript/provisional-description (170 values, 0 evidence)
:transcript/go-term EMPTY
:transcript/ignore (2 present, 0 evidence)


:transgene/evidence EMPTY
:transgene/remark (21 values, 0 evidence)

:transposon/corresponding-cds (346 values, 0 evidence)
:transposon/corresponding-pseudogene (18 values, 0 evidence)
:transposon/old-name (101 values, 0 evidence)

:transposon-family/remark (1 value, 0 evidence)

:variation/hme0-mating-not-successful EMPTY
:variation/hme1-mating-rarely-successful EMPTY
:variation/hme2-mating-usually-successful EMPTY
:variation/hme3-mating-always-successful EMPTY
:variation/me0-mating-not-successful EMPTY
:variation/me1-mating-rarely-successful EMPTY
:variation/me2-mating-usually-successful EMPTY
:variation/me3-mating-always-successful EMPTY

:variation/acceptor (9 values, 0 evidence)
:variation/donor (11 values, 0 evidence)
:variation/inversion EMPTY
:variation/silent EMPTY
:variation/dead EMPTY
:variation/missense EMPTY
:variation/readthrough EMPTY
:variation/phenotype-remark EMPTY
:variation/expr-pattern EMPTY
:variation/amber-uag EMPTY
:variation/opal-uga EMPTY
:variation/ochre-uaa EMPTY


:wbprocess/remark (20 values, 0 evidence)
:wbprocess/do-term EMPTY
:wbprocess/go-term (122 values, 0 evidence)
:wbprocess/gene-cluster (2 values, 0 evidence)
:wbprocess/historyical-gene EMPTY
:wbprocess/picture EMPTY
:wbprocess/summary (77 values, 0 evidence)
:wbprocess/movie EMPTY
:wbprocess/interaction (1615 values, 0 evidence)