Difference between revisions of "Unused Attributes"

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| ?2_point_data
 
| ?2_point_data
 
| Recs_all (4)
 
| Recs_all (4)
 +
| Removing because docs make this look inadvertant (thomasd)
 
|-
 
|-
 
| :ace2so/description
 
| :ace2so/description
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| #Address
 
| #Address
 
| Other_phone (2)
 
| Other_phone (2)
 +
| Removing for the sake of symmetry (thomasd)
 
|-
 
|-
 
| :affiliation/affiliation-address
 
| :affiliation/affiliation-address
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| ?Gene_cluster
 
| ?Gene_cluster
 
| Database
 
| Database
| Remove? need to check with Michael P. and Kevin --[[User:Kyook|Kyook]] ([[User talk:Kyook|talk]]) 23:29, 12 November 2014 (UTC)
+
| Remove? need to check with Michael P. and Kevin --[[User:Kyook|Kyook]] ([[User talk:Kyook|talk]]) 23:29, 12 November 2014 (UTC).  (mp says this can be removed -- thomasd 2015-02-02)
 
|-
 
|-
 
| :gene-cluster/title
 
| :gene-cluster/title

Revision as of 10:38, 2 February 2015

The following attributes are unused in the current Datomic-based DB prototype. It seems likely that many of them could be removed when we switch database.

Attribute ACeDB Model ACeDB Tag Notes
:2-point-data/linkage ?2_point_data Linkage
:2-point-data/locus-2 ?2_point_data Locus_2
:2-point-data.locus-2/locus ?2_point_data Locus_2 (1)
:2-point-data.locus-2/variation ?2_point_data Locus_2 (2)
:2-point-data.recs-all/fixme ?2_point_data Recs_all (4) Removing because docs make this look inadvertant (thomasd)
:ace2so/description ?Ace2SO Description
:address.other-phone/type #Address Other_phone (2) Removing for the sake of symmetry (thomasd)
:affiliation/affiliation-address #Affiliation Affiliation_address
:analysis/species-in-analysis ?Analysis Species_in_analysis
:anatomy-term/evidence ?Anatomy_term Evidence Remove (raymond)
:anatomy-term/reference ?Anatomy_term Reference Remove (raymond)
:anatomy-term/url ?Anatomy_term URL Remove (raymond)
:anatomy-term/version ?Anatomy_term Version Remove (raymond)
:anatomy-term.version/int-a ?Anatomy_term Version (1) Remove (raymond)
:anatomy-term.version/int-b ?Anatomy_term Version (2) Remove (raymond)
:antibody/person ?Antibody Person
:ao-code/description ?AO_code Description Remove (raymond)
:ao-code/remark ?AO_code Remark Remove (raymond)
:ao-code.remark/text ?AO_code Remark (1) Remove (raymond)
:balancer/locus ?Balancer Locus
:cds/concise-description ?CDS Concise_description
:cds/confidential-remark ?CDS Confidential_remark
:cds/detailed-description ?CDS Detailed_description
:cds.concise-description/text ?CDS Concise_description (1)
:cds.detailed-description/text ?CDS Detailed_description (1)
:cell/go-term ?Cell GO_term Remove ?Cell entirely (raymond)
:cell.go-term/go-code ?Cell GO_term (2) Remove ?Cell entirely (raymond)
:cell.go-term/go-term ?Cell GO_term (1) Remove ?Cell entirely (raymond)
:clone/does-not-hybridize-to ?Clone Does_not_hybridize_to
:clone/evidence ?Clone Evidence
:clone/gel ?Clone Gel
:clone/in-situ ?Clone In_Situ
:clone/negative-locus ?Clone Negative_locus
:clone/pattern ?Clone Pattern
:clone/person ?Clone Person
:clone/pmap ?Clone pMap
:clone.canonical-for/start ?Clone Canonical_for (2)
:clone.canonical-for/stop ?Clone Canonical_for (3)
:clone.does-not-hybridize-to/clone ?Clone Does_not_hybridize_to (1)
:clone.does-not-hybridize-to/grid ?Clone Does_not_hybridize_to (2)
:clone.gel/motif ?Clone Gel (1)
:clone.in-situ/start ?Clone In_Situ (1)
:clone.in-situ/stop ?Clone In_Situ (2)
:clone.inside-rearr/author ?Clone Inside_rearr (2)
:clone.negative-locus/author ?Clone Negative_locus (2)
:clone.negative-locus/locus ?Clone Negative_locus (1)
:clone.outside-rearr/author ?Clone Outside_rearr (2)
:clone.pmap/contig ?Clone pMap (1)
:clone.pmap/pos1 ?Clone pMap (2)
:clone.pmap/pos2 ?Clone pMap (3)
:clone.positive-variation/author ?Clone Positive_variation (2)
:condition/contained-in ?Condition Contained_in
:contig/pmap ?Contig pMap
:contig.pmap/start ?Contig pMap (1)
:contig.pmap/stop ?Contig pMap (2)
:database-field/remark ?Database_field Remark
:do-term/broad ?DO_term Broad Remove (Ranjana)
:do-term/reference ?DO_term Reference Remove (Ranjana)
:do-term/version ?DO_term Version Please keep, DO will introduce versioning (Ranjana)
:do-term/worm-disease-model ?DO_term Worm_disease_model Remove (Ranjana)
:do-term.worm-disease-model/species ?DO_term Worm_disease_model (2) Remove (Ranjana)
:do-term.worm-disease-model/text ?DO_term Worm_disease_model (1) Remove (Ranjana)
:embl-dump-info/embl-reference #EMBL_dump_info EMBL_reference
:embl-info/location #EMBL_info Location
:embl-info/note #EMBL_info Note
:embl-info/product #EMBL_info Product
:expr-pattern/cds ?Expr_pattern CDS Remove (Daniela)
:expr-pattern/cell ?Expr_pattern Cell Remove (Daniela)
:expr-pattern/cell-group ?Expr_pattern Cell_group Remove (Daniela)
:expr-pattern/construct ?Expr_pattern Construct Populated in WS245
:expr-pattern/pseudogene ?Expr_pattern Pseudogene Remove (Daniela)
:expr-pattern.cell/cell ?Expr_pattern Cell (1) Remove (Daniela)
:expr-pattern.cell-group/cell-group ?Expr_pattern Cell_group (1) Remove (Daniela)
:expr-profile/species ?Expr_profile Species
:expression-cluster/go-term ?Expression_cluster GO_term
:expression-cluster/mass-spectrometry ?Expression_cluster Mass_spectrometry
:expression-cluster/rnaseq ?Expression_cluster RNAseq
:expression-cluster/sage-tag ?Expression_cluster SAGE_tag
:expression-cluster/tiling-array ?Expression_cluster Tiling_array
:expression-cluster.expr-pattern/expr-pattern ?Expression_cluster Expr_pattern (1)
:expression-cluster.gene/text ?Expression_cluster Gene (2)
:expression-cluster.sage-tag/sage-tag ?Expression_cluster SAGE_tag (1)
:expression-cluster.sage-tag/text ?Expression_cluster SAGE_tag (2)
:feature/annotation ?Feature Annotation
:feature/associated-with-position-matrix ?Feature Associated_with_Position_Matrix
:feature/associated-with-transposon ?Feature Associated_with_transposon
:feature/associated-with-variation ?Feature Associated_with_variation
:feature/defined-by-author ?Feature Defined_by_author
:feature/strain ?Feature Strain
:feature.associated-with-position-matrix/position-matrix ?Feature Associated_with_Position_Matrix (1)
:feature.associated-with-transposon/transposon ?Feature Associated_with_transposon (1)
:feature.associated-with-variation/variation ?Feature Associated_with_variation (1)
:feature.score/text ?Feature Score (2)
:gene/detailed-description ?Gene Detailed_description We could remove this tag; it is no longer used for concise descriptions. kmva 2014-11-05
:gene-cluster/database ?Gene_cluster Database Remove? need to check with Michael P. and Kevin --Kyook (talk) 23:29, 12 November 2014 (UTC). (mp says this can be removed -- thomasd 2015-02-02)
:gene-cluster/title ?Gene_cluster Title Remove (--Kyook (talk) 23:29, 12 November 2014 (UTC))
:gene-cluster.database/accession ?Gene_cluster Database (3)
:gene-cluster.database/database ?Gene_cluster Database (1)
:gene-cluster.database/field ?Gene_cluster Database (2)
:gene.detailed-description/text ?Gene Detailed_description (1)
:genetic-code/remark ?Genetic_code Remark
:go-code/remark ?GO_code Remark
:go-code.remark/text ?GO_code Remark (1) Would like to keep this; I have a new GO_code file that uses this tag to hold a description of the GO_code. We could change to a more informative tag name, though. kmva 2014-11-05
:go-term/name ?GO_term Name It might actually be better to use this tag in place of the Term tag (and retire the Term tag). This would be more consistent with the tag name in the GO.obo file. kmva 2014-11-05
:gr-condition/cell #GR_condition Cell
:gr-condition/cell-group #GR_condition Cell_group
:grid/a1-labelling ?Grid A1_labelling
:grid/columns ?Grid Columns
:grid/no-stagger ?Grid No_stagger
:grid/size ?Grid Size
:grid/xy-labelling ?Grid XY_labelling
:grid-data/clone ?Grid_data Clone
:grid-data/date ?Grid_data Date
:grid-data/default-negative ?Grid_data Default_negative
:grid-data/grid ?Grid_data Grid
:grid-data/hybridizes-to ?Grid_data Hybridizes_to
:grid-data/laboratory ?Grid_data Laboratory
:grid-data/mapper ?Grid_data Mapper
:grid-data/positive-product ?Grid_data Positive_product
:grid-row/mixed ?Grid_row Mixed
:grid.size/x ?Grid Size (1)
:grid.size/y ?Grid Size (2)
:grid.xy-labelling/x ?Grid XY_labelling (1)
:grid.xy-labelling/y ?Grid XY_labelling (2)
:homology-group/evidence ?Homology_group Evidence
:homology-group/go-term ?Homology_group GO_term
:homology-group/inparanoid-group ?Homology_group InParanoid_group
:homology-type/nemnog #Homology_type nemNOG wasn't used in the last import, might change again in the future - Mh6 (talk)
:homology-type/nog #Homology_type NOG wasn't used in the last import, might change again in the future - Mh6 (talk)
:interaction/affinity-capture-ms ?Interaction Affinity_capture_MS Data is in Caltech's curation database. kmva 2014-11-05
:interaction/affinity-capture-rna ?Interaction Affinity_capture_RNA No data yet, but will be used. kmva 2014-11-05
:interaction/biochemical-activity ?Interaction Biochemical_activity Data is in Caltech's curation database. kmva 2014-11-05
:interaction/chromatin-immunoprecipitation ?Interaction Chromatin_immunoprecipitation Data is in Caltech's curation database. kmva 2014-11-05
:interaction/cocrystal-structure ?Interaction Cocrystal_structure Data is in Caltech's curation database. kmva 2014-11-05
:interaction/cofractionation ?Interaction Cofractionation Data is in Caltech's curation database. kmva 2014-11-05
:interaction/construct ?Interaction Construct
:interaction/database ?Interaction Database Data is in Caltech's curation database. kmva 2014-11-05
:interaction/deviation-from-expectation ?Interaction Deviation_from_expectation
:interaction/dnase-i-footprinting ?Interaction DNase_I_footprinting
:interaction/far-western ?Interaction Far_western Data is in Caltech's curation database. kmva 2014-11-05
:interaction/fluorescence-resonance-energy-transfer ?Interaction Fluorescence_resonance_energy_transfer Data is in Caltech's curation database. kmva 2014-11-05
:interaction/from-company ?Interaction From_company
:interaction/interactor-overlapping-protein ?Interaction Interactor_overlapping_protein
:interaction/neutrality-function ?Interaction Neutrality_function
:interaction/p-value ?Interaction P_value
:interaction/protein-fragment-complementation-assay ?Interaction Protein_fragment_complementation_assay Data is in Caltech's curation database. kmva 2014-11-05
:interaction/protein-peptide ?Interaction Protein_peptide Data is in Caltech's curation database. kmva 2014-11-05
:interaction/protein-rna ?Interaction Protein_RNA Data is in Caltech's curation database. kmva 2014-11-05
:interaction/reconstituted-complex ?Interaction Reconstituted_complex Data is in Caltech's curation database. kmva 2014-11-05
:interaction/unaffiliated-construct ?Interaction Unaffiliated_construct
:interaction.database/accession ?Interaction Database (3) Data is in Caltech's curation database. kmva 2014-11-05
:interaction.database/database ?Interaction Database (1) Data is in Caltech's curation database. kmva 2014-11-05
:interaction.database/field ?Interaction Database (2) Data is in Caltech's curation database. kmva 2014-11-05
:interaction.interactor-overlapping-protein/protein ?Interaction Interactor_overlapping_protein (1)
:interactor-info/construct #Interactor_info Construct
:interactor-info/inferred-automatically #Interactor_info Inferred_automatically
:lab-location/freezer #Lab_Location Freezer
:lab-location/liquidn2 #Lab_Location LiquidN2
:lab-location/minus70 #Lab_Location Minus70
:lab-location/remark #Lab_Location Remark
:lab-location.remark/text #Lab_Location Remark (1)
:laboratory/clean-address ?Laboratory Clean_address
:lane/band #Lane Band
:lane/band-lengths #Lane Band_Lengths
:lane/bands #Lane Bands
:lane.band/float #Lane Band (1)
:lane.band/text #Lane Band (2)
:library/database ?Library Database
:library/description ?Library Description
:library/life-stage ?Library Life_stage
:library/species ?Library Species
:library/strain ?Library Strain
:library/tissue ?Library Tissue
:library/vector ?Library Vector
:library.database/accession ?Library Database (3)
:library.database/database ?Library Database (1)
:library.database/field ?Library Database (2)
:life-stage/curated-by ?Life_stage Curated_by
:locus/detection-method ?Locus Detection_method
:locus/evidence ?Locus Evidence
:locus/laboratory ?Locus Laboratory
:locus/other-name ?Locus Other_name
:locus/remark ?Locus Remark
:locus/rflp ?Locus RFLP
:locus/snp ?Locus SNP
:locus/snp-assay ?Locus SNP_assay
:locus/species ?Locus Species
:locus/status ?Locus Status
:locus/transposon-insertion ?Locus Transposon_insertion
:locus/well-ordered ?Locus Well_ordered
:locus.other-name/text ?Locus Other_name (1)
:locus.remark/text ?Locus Remark (1)
:locus.snp-assay/pcr-product ?Locus SNP_assay (1)
:locus.snp-assay/text ?Locus SNP_assay (2)
:map/author ?Map Author
:map/embl-chromosome ?Map EMBL_chromosome
:map/flipped ?Map Flipped
:map/from-map ?Map From_map
:map/includes ?Map Includes
:map/map ?Map Map
:map/no-cache ?Map No_cache
:map/non-graphic ?Map Non_graphic
:map/title ?Map Title
:map/unit ?Map Unit
:map-offset/relative #Map_offset Relative
:map-position/multi-ends #Map_position Multi_Ends
:map-position/multi-position #Map_position Multi_Position
:map-position/with-clone #Map_position With_clone
:map-position/with-locus #Map_position With_locus
:map-position.multi-ends/max #Map_position Multi_Ends (2)
:map-position.multi-ends/min #Map_position Multi_Ends (1)
:map-position.multi-position/float #Map_position Multi_Position (1)
:map-position.with-clone/clone #Map_position With_clone (1)
:map-position.with-locus/locus #Map_position With_locus (1)
:map.centre/max ?Map Centre (2)
:map.map/map ?Map Map (1)
:mass-spec-data/charge-state #Mass_spec_data Charge_state
:mass-spec-data/deltacn #Mass_spec_data DeltaCN
:mass-spec-data/sp-rank #Mass_spec_data Sp_rank
:mass-spec-data/sp-score #Mass_spec_data Sp_score
:mass-spec-data/xcorr #Mass_spec_data XCorr
:mass-spec-experiment/anatomy-term ?Mass_spec_experiment Anatomy_term
:mass-spec-experiment/author ?Mass_spec_experiment Author
:mass-spec-experiment/cell-type ?Mass_spec_experiment Cell_type
:mass-spec-experiment/false-discovery-rate ?Mass_spec_experiment False_discovery_rate
:mass-spec-experiment/genotype ?Mass_spec_experiment Genotype
:mass-spec-experiment/laboratory ?Mass_spec_experiment Laboratory
:mass-spec-experiment/minimum-ion-proportion ?Mass_spec_experiment Minimum_ion_proportion
:mass-spec-experiment/minimum-peptide-length ?Mass_spec_experiment Minimum_peptide_length
:method/gene-assemble-method ?Method Gene_assemble_method
:method/gf-3-cutoff ?Method GF_3_cutoff
:method/gf-5-cutoff ?Method GF_5_cutoff
:method/gf-atg-cutoff ?Method GF_ATG_cutoff
:method/gf-range ?Method GF_range
:method/max-mag ?Method Max_mag
:method/min-mag ?Method Min_mag
:method/score-by-histogram ?Method Score_by_histogram
:method/score-by-offset ?Method Score_by_offset
:method/symbol ?Method Symbol
:method.gene-assemble-method/float ?Method Gene_assemble_method (2)
:method.gene-assemble-method/method ?Method Gene_assemble_method (1)
:method.intron-cost/min ?Method Intron_cost (3)
:microarray-data/a-vs-b-log-ratio #Microarray_data A_vs_B_log_ratio
:microarray-data/a-vs-b-sd #Microarray_data A_vs_B_SD
:microarray-data/confidence-level #Microarray_data Confidence_level
:microarray-data/p-value #Microarray_data P_value
:microarray-results/remark ?Microarray_results Remark
:microarray-results.remark/text ?Microarray_results Remark (1)
:mixed-grid-row/clone ?Mixed_grid_row Clone
:mixed-grid-row.clone/clone ?Mixed_grid_row Clone (1)
:molecule/name ?Molecule Name Remove --Kyook (talk) 23:29, 12 November 2014 (UTC)
:molecule/remark ?Molecule Remark please keep --Kyook (talk) 23:29, 12 November 2014 (UTC)
:molecule.remark/text ?Molecule Remark (1) please keep --Kyook (talk) 23:29, 12 November 2014 (UTC)
:motif/db-remark ?Motif DB_remark
:motif/db-text ?Motif DB_text
:motif/num-mismatch ?Motif Num_mismatch
:motif/redundant ?Motif Redundant
:motif.db-remark/text ?Motif DB_remark (1)
:motif.go-term/go-code ?Motif GO_term (2)
:movie/description ?Movie Description Keep (Daniela)
:movie/variation ?Movie Variation Keep (Daniela)
:oligo/gc ?Oligo GC
:oligo/pairwise-scores ?Oligo Pairwise_scores
:oligo/score ?Oligo Score
:oligo/tm ?Oligo Tm
:oligo-set/oligo ?Oligo_set Oligo
:oligo-set/target-exons ?Oligo_set Target_exons
:oligo-set.target-exons/end ?Oligo_set Target_exons (2)
:oligo-set.target-exons/start ?Oligo_set Target_exons (1)
:oligo.pairwise-scores/melting-temperature ?Oligo Pairwise_scores (3)
:oligo.pairwise-scores/oligo ?Oligo Pairwise_scores (1)
:oligo.pairwise-scores/score ?Oligo Pairwise_scores (2)
:paper/directory ?Paper Directory Could remove this tag. kmva 2014-11-05
:paper/email ?Paper Email Could keep this? The intent was to use this if we wanted to actually include the text of an email as a paper reference. kmva 2014-11-05
:paper/original-timestamp ?Paper Original_timestamp Not 100% certain, but I think we could remove this one. kmva 2014-11-05
:paper/species ?Paper Species Would like to keep this. kmva 2014-11-05
:paper.species/species ?Paper Species (1) Would like to keep this. kmva 2014-11-05
:pcr-product/species ?PCR_product Species
:pcr-product.oligo/int-b ?PCR_product Oligo (2)
:pcr-product.oligo/int-c ?PCR_product Oligo (3)
:person/affiliation ?Person Affiliation
:person/postgresql-id ?Person PostgreSQL_id
:person/publishes-as ?Person Publishes_as
:phenotype/do-term ?Phenotype DO_term ask Ranjana --Kyook (talk) 06:25, 13 November 2014 (UTC)
:phenotype/short-name ?Phenotype Short_name ask Gary S. --Kyook (talk) 06:25, 13 November 2014 (UTC)
:phenotype-info/mixed #Phenotype_info Mixed Wow, I wasn't aware of this tag. Will have to look up its intended use. Might be handy, so please keep for now. --Kyook (talk) 06:25, 13 November 2014 (UTC)
:phenotype-info/not #Phenotype_info Not Remove --Kyook (talk) 06:25, 13 November 2014 (UTC)
:phenotype.do-term/do-term ?Phenotype DO_term (1) ask Ranjana --Kyook (talk) 06:25, 13 November 2014 (UTC)
:phenotype.go-term/go-code ?Phenotype GO_term (2) ask Kimberly --Kyook (talk) 06:25, 13 November 2014 (UTC)
:phenotype.short-name/text ?Phenotype Short_name (1) ask Gary S. --Kyook (talk) 06:25, 13 November 2014 (UTC)
:picture/evidence ?Picture Evidence Remove (Daniela)
:picture/species ?Picture Species Keep (Daniela)
:pos-neg-data.gene-2/variation ?Pos_neg_data Gene_2 (2)
:pos-neg-data.locus-2/variation ?Pos_neg_data Locus_2 (2)
:position-confidence/approximate #Position_confidence Approximate
:position-confidence/exact #Position_confidence Exact
:position-confidence/inferred-from-gps #Position_confidence Inferred_from_GPS
:protein/brigpep ?Protein Brigpep
:pseudogene/concise-description ?Pseudogene Concise_description
:pseudogene/confidential-remark ?Pseudogene Confidential_remark
:pseudogene/detailed-description ?Pseudogene Detailed_description
:pseudogene/provisional-description ?Pseudogene Provisional_description
:pseudogene.concise-description/text ?Pseudogene Concise_description (1)
:pseudogene.detailed-description/text ?Pseudogene Detailed_description (1)
:pseudogene.provisional-description/text ?Pseudogene Provisional_description (1)
:rearrangement/by-other ?Rearrangement By_other
:rearrangement/introgression ?Rearrangement Introgression
:rearrangement/url ?Rearrangement URL
:rearrangement.locus-inside/author ?Rearrangement Locus_inside (2)
:rearrangement.locus-outside/author ?Rearrangement Locus_outside (2)
:reconstruction/author ?Reconstruction Author
:reconstruction/date ?Reconstruction Date
:reconstruction/description ?Reconstruction Description
:reconstruction/remark ?Reconstruction Remark
:reconstruction.remark/text ?Reconstruction Remark (1)
:reference/description ?Reference Description
:reference/reference ?Reference Reference
:reference/remark ?Reference Remark
:reference/species ?Reference Species
:reference.remark/text ?Reference Remark (1)
:rnai/clone ?RNAi Clone
:sage-data/confidence-level #SAGE_data Confidence_level
:sage-data/number-of-experiments #SAGE_data Number_of_experiments
:sage-data/sequence-quality #SAGE_data Sequence_quality
:sage-data/significance #SAGE_data Significance
:sage-data/standard-deviation #SAGE_data Standard_deviation
:sage-experiment/remark ?SAGE_experiment Remark
:sage-experiment/species ?SAGE_experiment Species
:sage-experiment.remark/text ?SAGE_experiment Remark (1)
:sage-tag/evidence ?SAGE_tag Evidence
:sage-tag/predicted-cds ?SAGE_tag Predicted_CDS
:sage-tag/pseudogene ?SAGE_tag Pseudogene
:sage-tag/remark ?SAGE_tag Remark
:sage-tag.predicted-cds/cds ?SAGE_tag Predicted_CDS (1)
:sage-tag.pseudogene/pseudogene ?SAGE_tag Pseudogene (1)
:sage-tag.remark/text ?SAGE_tag Remark (1)
:sequence/agp-fragment ?Sequence AGP_fragment
:sequence/anatomy-term ?Sequence Anatomy_term
:sequence/archived ?Sequence Archived
:sequence/briggsae-canonical ?Sequence Briggsae_canonical
:sequence/clone-end-seq-read ?Sequence Clone_end_seq_read
:sequence/confidential-remark ?Sequence Confidential_remark
:sequence/contains-reads ?Sequence Contains_reads
:sequence/crc64 ?Sequence CRC64
:sequence/est-consensus ?Sequence EST_consensus
:sequence/flipped ?Sequence Flipped
:sequence/from-database ?Sequence From_database
:sequence/genomic ?Sequence Genomic
:sequence/go-term ?Sequence GO_term
:sequence/library-construction ?Sequence Library_construction
:sequence/match-type ?Sequence Match_type
:sequence/predicted-3 ?Sequence Predicted_3
:sequence/predicted-5 ?Sequence Predicted_5
:sequence/read-coverage ?Sequence Read_coverage
:sequence/received ?Sequence Received
:sequence/scrna ?Sequence scRNA
:sequence/shotgun-complete ?Sequence Shotgun_complete
:sequence/snorna ?Sequence snoRNA
:sequence/source-exons ?Sequence Source_exons
:sequence.agp-fragment/end ?Sequence AGP_fragment (3)
:sequence.agp-fragment/sequence ?Sequence AGP_fragment (1)
:sequence.agp-fragment/start ?Sequence AGP_fragment (2)
:sequence.archived/datetype ?Sequence Archived (1)
:sequence.archived/disk ?Sequence Archived (2)
:sequence.date/comment ?Sequence Date (2)
:sequence.from-database/database ?Sequence From_database (1)
:sequence.from-database/version ?Sequence From_database (2)
:sequence.gap-right/size ?Sequence Gap_right (1)
:sequence.gap-right/text ?Sequence Gap_right (2)
:sequence.go-term/go-code ?Sequence GO_term (2)
:sequence.go-term/go-term ?Sequence GO_term (1)
:sequence.oligo/int-b ?Sequence Oligo (2)
:sequence.oligo/int-c ?Sequence Oligo (3)
:sequence.oligo/method ?Sequence Oligo (4)
:sequence.predicted-3/float ?Sequence Predicted_3 (4)
:sequence.predicted-3/int-b ?Sequence Predicted_3 (2)
:sequence.predicted-3/int-c ?Sequence Predicted_3 (3)
:sequence.predicted-3/method ?Sequence Predicted_3 (1)
:sequence.predicted-5/float ?Sequence Predicted_5 (4)
:sequence.predicted-5/int-b ?Sequence Predicted_5 (2)
:sequence.predicted-5/int-c ?Sequence Predicted_5 (3)
:sequence.predicted-5/method ?Sequence Predicted_5 (1)
:sequence.source-exons/end ?Sequence Source_exons (2)
:sequence.source-exons/start ?Sequence Source_exons (1)
:smap-info/align #SMap_info Align
:smap-info/content #SMap_info Content
:smap-info/max-mag #SMap_info Max_mag
:smap-info/method #SMap_info Method
:smap-info/min-mag #SMap_info Min_mag
:smap-info/mismatch #SMap_info Mismatch
:smap-info.align/child-pos #SMap_info Align (2)
:smap-info.align/length #SMap_info Align (3)
:smap-info.align/parent-pos #SMap_info Align (1)
:so-term/derived-from ?SO_term Derived_from
:species/g-species ?Species G_species
:splice-confirmation/homology #Splice_confirmation Homology
:splice-confirmation/mass-spec #Splice_confirmation Mass_spec
:splice-confirmation/mrna #Splice_confirmation mRNA
:splice-confirmation/ost #Splice_confirmation OST
:splice-confirmation/rnaseq #Splice_confirmation RNASeq
:splice-confirmation/rst #Splice_confirmation RST
:splice-confirmation.rnaseq/analysis #Splice_confirmation RNASeq (1)
:splice-confirmation.rnaseq/int #Splice_confirmation RNASeq (2)
:strain/contact ?Strain Contact
:strain/elevation ?Strain Elevation
:strain/picture ?Strain Picture
:strain.elevation/float ?Strain Elevation (1)
:structure-data/hsqc ?Structure_data Hsqc
:structure-data/in-pdb ?Structure_data In_pdb
:structure-data/nmr-assigned ?Structure_data Nmr_assigned
:structure-data/nmr-structure ?Structure_data Nmr_structure
:structure-data/other ?Structure_data Other
:structure-data/remark ?Structure_data Remark
:structure-data/test-target ?Structure_data Test_target
:structure-data.remark/text ?Structure_data Remark (1)
:transcript/concise-description ?Transcript Concise_description
:transcript/detailed-description ?Transcript Detailed_description
:transcript/end-not-found ?Transcript End_not_found
:transcript/go-term ?Transcript GO_term
:transcript/mrna ?Transcript mRNA
:transcript/snlrna ?Transcript snlRNA
:transcript/start-not-found ?Transcript Start_not_found
:transcript/strna ?Transcript stRNA
:transcript.concise-description/text ?Transcript Concise_description (1)
:transcript.detailed-description/text ?Transcript Detailed_description (1)
:transcript.go-term/go-code ?Transcript GO_term (2)
:transcript.go-term/go-term ?Transcript GO_term (1)
:transcription-factor/species ?Transcription_factor Species
:transgene/author ?Transgene Author
:transgene/coinjection-other ?Transgene Coinjection_other
:transgene/evidence ?Transgene Evidence
:transgene/extrachromosomal ?Transgene Extrachromosomal
:transgene/integrated-from ?Transgene Integrated_from
:transposon/ltr-region ?Transposon LTR_region
:transposon/pseudogene-child ?Transposon Pseudogene_child
:transposon-family/db-annotation ?Transposon_family DB_annotation
:transposon-family.db-annotation/database ?Transposon_family DB_annotation (1)
:transposon-family.db-annotation/longtext ?Transposon_family DB_annotation (2)
:transposon.ltr-region/end ?Transposon LTR_region (2)
:transposon.ltr-region/start ?Transposon LTR_region (1)
:transposon.pseudogene-child/end ?Transposon Pseudogene_child (3)
:transposon.pseudogene-child/pseudogene ?Transposon Pseudogene_child (1)
:transposon.pseudogene-child/start ?Transposon Pseudogene_child (2)
:tree/bootstrap-factor ?Tree Bootstrap_Factor
:tree/descriptive-labels ?Tree Descriptive_Labels
:tree/hide-bootstraps ?Tree Hide_Bootstraps
:tree/no-header ?Tree No_Header
:tree/normalization ?Tree Normalization
:treenode/bootstrap ?TreeNode Bootstrap
:treenode/distance ?TreeNode Distance
:treenode/hide-bootstraps ?TreeNode Hide_Bootstraps
:treenode/show-bootstrap ?TreeNode Show_Bootstrap
:treenode/taxon ?TreeNode Taxon
:treenode/xid ?TreeNode Id
:variation/amber-uag ?Variation Amber_UAG
:variation/dead ?Variation Dead
:variation/derived-from-construct ?Variation Derived_from_construct
:variation/derived-from-variation ?Variation Derived_from_variation
:variation/engineered-allele ?Variation Engineered_allele
:variation/expr-pattern ?Variation Expr_pattern
:variation/hme0-mating-not-successful ?Variation HME0_Mating_not_successful Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook 23:42, 12 November 2014 (UTC)
:variation/hme1-mating-rarely-successful ?Variation HME1_Mating_rarely_successful Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook 23:42, 12 November 2014 (UTC)
:variation/hme2-mating-usually-successful ?Variation HME2_Mating_usually_successful Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook 23:42, 12 November 2014 (UTC)
:variation/hme3-mating-always-successful ?Variation HME3_Mating_always_successful Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook 23:42, 12 November 2014 (UTC)
:variation/inversion ?Variation Inversion
:variation/linked-to ?Variation Linked_to
:variation/me0-mating-not-successful ?Variation ME0_Mating_not_successful Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook 23:42, 12 November 2014 (UTC)
:variation/me1-mating-rarely-successful ?Variation ME1_Mating_rarely_successful Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook 23:42, 12 November 2014 (UTC)
:variation/me2-mating-usually-successful ?Variation ME2_Mating_usually_successful Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook 23:42, 12 November 2014 (UTC)
:variation/me3-mating-always-successful ?Variation ME3_Mating_always_successful Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook 23:42, 12 November 2014 (UTC)
:variation/missense ?Variation Missense
:variation/nature-of-variation ?Variation Nature_of_variation
:variation/ochre-uaa ?Variation Ochre_UAA
:variation/opal-uga ?Variation Opal_UGA
:variation/phenotype-remark ?Variation Phenotype_remark Curated through phenotype_info, not sure this is needed here --Kyook 23:42, 12 November 2014 (UTC)
:variation/production-method ?Variation Production_method
:variation/readthrough ?Variation Readthrough
:variation/silent ?Variation Silent
:variation/split-into ?Variation Split_into
:variation/text ?Variation text
:variation/unique ?Variation Unique
:variation.amber-uag/text ?Variation Amber_UAG (1)
:variation.expr-pattern/expr-pattern ?Variation Expr_pattern (1)
:variation.missense/text ?Variation Missense (1)
:variation.ochre-uaa/text ?Variation Ochre_UAA (1)
:variation.opal-uga/text ?Variation Opal_UGA (1)
:variation.phenotype-remark/text ?Variation Phenotype_remark (1) Curated through phenotype_info, not sure this is needed here --Kyook 23:42, 12 November 2014 (UTC)
:variation.readthrough/text ?Variation Readthrough (1)
:variation.silent/text ?Variation Silent (1)
:wbprocess/do-term ?WBProcess DO_term please leave for now --Kyook 23:42, 12 November 2014 (UTC)
:wbprocess/historical-gene ?WBProcess Historical_gene please leave for now --Kyook 23:42, 12 November 2014 (UTC)
:wbprocess/marker-construct ?WBProcess Marker_construct please leave for now --Kyook 23:42, 12 November 2014 (UTC)
:wbprocess/movie ?WBProcess Movie please leave for now --Kyook 23:42, 12 November 2014 (UTC)
:wbprocess/name ?WBProcess Name please leave for now --Kyook 23:42, 12 November 2014 (UTC)
:wbprocess/picture ?WBProcess Picture please leave for now --Kyook 23:42, 12 November 2014 (UTC)
:wbprocess/process-term ?WBProcess Process_term please leave for now --Kyook 23:42, 12 November 2014 (UTC)
:wbprocess.do-term/do-term ?WBProcess DO_term (1) please leave for now --Kyook 23:42, 12 November 2014 (UTC)
:wbprocess.historical-gene/gene ?WBProcess Historical_gene (1) please leave for now --Kyook 23:42, 12 November 2014 (UTC)
:wbprocess.movie/movie ?WBProcess Movie (1) please leave for now --Kyook 23:42, 12 November 2014 (UTC)
:wbprocess.picture/picture ?WBProcess Picture (1) please leave for now --Kyook 23:42, 12 November 2014 (UTC)