UniProtKB gpad to WormBase .ace

• The gpad file that contains all of the C. elegans annotations currently in Protein2GO is produced by UniProtKB on a weekly basis.
  • A new file is available every Monday.
  • The file is located here: ftp://ftp.ebi.ac.uk/pub/contrib/goa/ and is named: gp_association.6239_wormbase.gz

• Download the file from the UniProtKB ftp link and put it on tazendra here (in the appropriate year and month directory):
  • /home/acedb/kimberly/citace_upload/go/gpad2ace
  • for example: /home/acedb/kimberly/citace_upload/go/gpad2ace/2015_February

• To convert the gpad file to a .ace file you'll need:
  • gp2protein.wb file that maps UniProtKB IDs to WBGenes
  • go_gpad_parser.pl