Difference between revisions of "UniProt-GOA syntax checking"
From WormBaseWiki
Jump to navigationJump to searchLine 1: | Line 1: | ||
=Errors to Fix= | =Errors to Fix= | ||
==With/From Column== | ==With/From Column== | ||
− | #IC annotations need GO term in With/From | + | #IC annotations need GO term in With/From - DONE |
#ISS annotations need database identifiers in With/From | #ISS annotations need database identifiers in With/From | ||
+ | |||
==Phenotype2GO Pipeline== | ==Phenotype2GO Pipeline== | ||
#Remove annotations mapping to ncRNA and pseudogenes | #Remove annotations mapping to ncRNA and pseudogenes |
Revision as of 17:38, 24 July 2012
Contents
Errors to Fix
With/From Column
- IC annotations need GO term in With/From - DONE
- ISS annotations need database identifiers in With/From
Phenotype2GO Pipeline
- Remove annotations mapping to ncRNA and pseudogenes
IEA Pipeline
- UniProtKB will perform InterPro2GO mappings in-house
- TMHMM-derived annotations need a resolvable accession in With/From column
- Is there an accession for TMHMM?
- If not, what could be used in place of this pipeline if we stand to lose annotations?
Annotations to ncRNAs
- Need a specific mapping file for those genes
Annotations to Uncloned Genes
- Need a specific mapping file for those genes
gp2protein File
- Need a version updated as often as possible - UniProtKB can upload nightly
==Unsupported/Missing Reference
- Including doi's instead would be fine, if available