Difference between revisions of "UniProt-GOA syntax checking"
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##Is there an accession for TMHMM? | ##Is there an accession for TMHMM? | ||
##If not, what could be used in place of this pipeline if we stand to lose annotations? | ##If not, what could be used in place of this pipeline if we stand to lose annotations? | ||
| + | ==Annotations to ncRNAs== | ||
| + | #Need a specific mapping file for those genes | ||
==Annotations to Uncloned Genes== | ==Annotations to Uncloned Genes== | ||
#Need a specific mapping file for those genes | #Need a specific mapping file for those genes | ||
Revision as of 17:30, 24 July 2012
Contents
Errors to Fix
With/From Column
- IC annotations need GO term in With/From
- ISS annotations need database identifiers in With/From
Phenotype2GO Pipeline
- Remove annotations mapping to ncRNA and pseudogenes
IEA Pipeline
- UniProtKB will perform InterPro2GO mappings in-house
- TMHMM-derived annotations need a resolvable accession in With/From column
- Is there an accession for TMHMM?
- If not, what could be used in place of this pipeline if we stand to lose annotations?
Annotations to ncRNAs
- Need a specific mapping file for those genes
Annotations to Uncloned Genes
- Need a specific mapping file for those genes
gp2protein File
- Need a version updated as often as possible - UniProtKB can upload nightly
==Unsupported/Missing Reference
- Including doi's instead would be fine, if available
