Difference between revisions of "Type - mapping incoming Type"

From WormBaseWiki
Jump to navigationJump to search
(New page: Nearly all articles are assigned the Type Journal Article when they first appear in PubMed. Note that in PubMed, the Type is not always case sensitive; they have JOURNAL ARTICLE and Journa...)
 
Line 1: Line 1:
 
Nearly all articles are assigned the Type Journal Article when they first appear in PubMed.
 
Nearly all articles are assigned the Type Journal Article when they first appear in PubMed.
 +
 
Note that in PubMed, the Type is not always case sensitive; they have JOURNAL ARTICLE and Journal Article.
 
Note that in PubMed, the Type is not always case sensitive; they have JOURNAL ARTICLE and Journal Article.
  
Line 5: Line 6:
 
an example of which is shown below:
 
an example of which is shown below:
  
<PublicationTypeList>
+
    <PublicationTypeList>
    <PublicationType>Journal Article</PublicationType>
+
          <PublicationType>Journal Article</PublicationType>
    <PublicationType>Research Support, Non-U.S. Gov't</PublicationType>
+
          <PublicationType>Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
+
    </PublicationTypeList>
 +
 
  
 +
'''Initial entry:''' If PublicationType value = Journal Article only, take Journal Article.
  
Initial entry: If PublicationType value = Journal Article only, take Journal Article.
+
'''Initial entry:''' If PublicationType value = Journal Article plus one or more additional values from the list below,
Initial entry: If PublicationType value = Journal Article plus one or more additional values from the list below,
 
 
take only the value(s) from the list below.
 
take only the value(s) from the list below.
  
After indexing (STATUS=MEDLINE), if PublicationType value = Journal Article only, keep Journal Article.
+
'''After indexing (STATUS=MEDLINE)''', if PublicationType value = Journal Article only, keep Journal Article.
After indexing (STATUS=MEDLINE), if PublicationType value = Journal Article plus one or more additional values
+
 
 +
'''After indexing (STATUS=MEDLINE)''', if PublicationType value = Journal Article plus one or more additional values
 
from the list below, replace Journal Article with the value(s) from the list below.  
 
from the list below, replace Journal Article with the value(s) from the list below.  
  
Review      
+
Review
Comment         
+
     
News      
+
Comment  
Letter         
+
        
Editorial      
+
News
Congresses      
+
     
Historical_article      
+
Letter  
Biography         
+
        
Interview      
+
Editorial
Lectures         
+
     
Interactive_tutorial         
+
Congresses
Retracted_publication      
+
     
Technical_report         
+
Historical_article
Directory      
+
     
Monograph         
+
Biography  
 +
        
 +
Interview
 +
     
 +
Lectures  
 +
        
 +
Interactive_tutorial  
 +
        
 +
Retracted_publication
 +
     
 +
Technical_report  
 +
        
 +
Directory
 +
     
 +
Monograph  
 +
        
 
Published_erratum  
 
Published_erratum  
  
  
 
If the PublicationType tag does not have any of these values, then assign Type Other.
 
If the PublicationType tag does not have any of these values, then assign Type Other.
 +
 
In these cases, we'll have to check to see if we need to add a new Type to our list.  
 
In these cases, we'll have to check to see if we need to add a new Type to our list.  
  
 
Meeting_abstract, Gazette_abstract, Book_chapter, and Book will be assigned as these Types are entered into
 
Meeting_abstract, Gazette_abstract, Book_chapter, and Book will be assigned as these Types are entered into
 
postgres.
 
postgres.

Revision as of 16:12, 9 December 2009

Nearly all articles are assigned the Type Journal Article when they first appear in PubMed.

Note that in PubMed, the Type is not always case sensitive; they have JOURNAL ARTICLE and Journal Article.

Remember that we are ignoring the various Research Support entries in the PubMed PublicationTypeList XML tag, an example of which is shown below:

    <PublicationTypeList>
         <PublicationType>Journal Article</PublicationType>
         <PublicationType>Research Support, Non-U.S. Gov't</PublicationType>
    </PublicationTypeList>


Initial entry: If PublicationType value = Journal Article only, take Journal Article.

Initial entry: If PublicationType value = Journal Article plus one or more additional values from the list below, take only the value(s) from the list below.

After indexing (STATUS=MEDLINE), if PublicationType value = Journal Article only, keep Journal Article.

After indexing (STATUS=MEDLINE), if PublicationType value = Journal Article plus one or more additional values from the list below, replace Journal Article with the value(s) from the list below.

Review

Comment

News

Letter

Editorial

Congresses

Historical_article

Biography

Interview

Lectures

Interactive_tutorial

Retracted_publication

Technical_report

Directory

Monograph

Published_erratum


If the PublicationType tag does not have any of these values, then assign Type Other.

In these cases, we'll have to check to see if we need to add a new Type to our list.

Meeting_abstract, Gazette_abstract, Book_chapter, and Book will be assigned as these Types are entered into postgres.