Textpresso-based automated extraction of concise descriptions
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Generating gene sets with and without concise descriptions
Query for all genes with a concise description from Postgres: Relevant postgres table names:
- con_wbgene: Stores the WBGene ID and gene names
- con_desctype: Type of description (relevant for us: Concise_description)
- con_desctext: Text of the concise description
Semantic categories targeted for extraction from the literature
1. Molecular identity
2. Orthology/Similarity
Wild type Function 3. Processes 4. Pathways
5. Mutant Phenotypes
Interactions 6. Genetic 7. Physical
8. Molecular Function
Expression 9. Tissue expression 10. Sub-cellular localization