Textpresso-based automated extraction of concise descriptions

From WormBaseWiki
Revision as of 17:27, 8 May 2014 by Rkishore (talk | contribs) (Created page with "==Generating gene sets with and without concise descriptions== Query for all genes with a concise description from Postgres: Relevant postgres table names: *con_wbgene: Store...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigationJump to search

Generating gene sets with and without concise descriptions

Query for all genes with a concise description from Postgres: Relevant postgres table names:

  • con_wbgene: Stores the WBGene ID and gene names
  • con_desctype: Type of description (relevant for us: Concise_description)
  • con_desctext: Text of the concise description

Semantic categories targeted for extraction from the literature

1. Molecular identity

2. Orthology/Similarity

Wild type Function 3. Processes 4. Pathways

5. Mutant Phenotypes

Interactions 6. Genetic 7. Physical

8. Molecular Function

Expression 9. Tissue expression 10. Sub-cellular localization