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| − | ==Generating gene sets with and without concise descriptions==
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| − | ====Set of genes with a concise description====
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| − | Query for all genes with a concise description from Postgres:
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| − | Relevant postgres table names:
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| − | *con_wbgene: Stores the WBGene ID and gene names
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| − | *con_desctype: Type of description (relevant for us: Concise_description)
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| − | *con_desctext: Text of the concise description
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| − | Query for all WBGenes that have a concise description (in con_desctext AND con_desctype):
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| − | SELECT DISTINCT(con_wbgene) FROM con_wbgene WHERE joinkey IN (SELECT joinkey FROM con_desctext WHERE con_desctext IS NOT NULL) AND joinkey IN (SELECT joinkey FROM con_desctype WHERE con_desctype IS NOT NULL) ORDER BY con_wbgene;
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| − | #of genes with a concise description (as of 05.07.2014)=6,624
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| − | ====Set of genes with no concise description====
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| − | ====Set of genes with no concise description and at least one published paper====
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| − | ==Semantic categories targeted for extraction from the literature==
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| − | 1. Molecular identity
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| − | 2. Orthology/Similarity
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| − | Wild type Function <\br>
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| − | 3. Processes
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| − | 4. Pathways
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| − | 5. Mutant Phenotypes
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| − | Interactions <\br>
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| − | 6. Genetic
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| − | 7. Physical
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| − | 8. Molecular Function
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| − | Expression <\br>
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| − | 9. Tissue expression
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| − | 10. Sub-cellular localization
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