Difference between revisions of "Textpresso-based automated extraction of concise descriptions"

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(Created page with "==Generating gene sets with and without concise descriptions== Query for all genes with a concise description from Postgres: Relevant postgres table names: *con_wbgene: Store...")
 
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==Generating gene sets with and without concise descriptions==
 
  
Query for all genes with a concise description from Postgres:
 
Relevant postgres table names:
 
*con_wbgene: Stores the WBGene ID and gene names
 
*con_desctype: Type of description (relevant for us: Concise_description)
 
*con_desctext: Text of the concise description
 
 
==Semantic categories targeted for extraction from the literature==
 
 
1. Molecular identity
 
 
2. Orthology/Similarity
 
 
Wild type Function
 
3. Processes
 
4. Pathways
 
 
5. Mutant Phenotypes
 
 
Interactions
 
6. Genetic
 
7. Physical
 
 
8. Molecular Function
 
 
Expression
 
9. Tissue expression
 
10. Sub-cellular localization
 

Latest revision as of 23:01, 10 September 2014