Difference between revisions of "Talk:WBConfCall 2014.08.07-Agenda and Minutes"

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Example data(single gene):
 
Example data(single gene):
 +
 +
.def above was slightly different to one used for this data as the .def now contains the Potential model tags in column 3
 +
 
<pre>
 
<pre>
 
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000005406";"WBPhenotype:0000018";"The contraction and relaxation movements of the pharynx occur at a greater frequency compared to that observed for control animals."
 
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000005406";"WBPhenotype:0000018";"The contraction and relaxation movements of the pharynx occur at a greater frequency compared to that observed for control animals."

Revision as of 11:51, 6 August 2014

// Spread sheet definition for the ACeDB software 
// User: pad
// Date: 2014-08-05_15:50:54

// %n (%%n in the graphic) are parameter to be given on the command line in tace
// or by default by the Parameters given in this file
// \%n (%n in the graphic) are substituted by the value of column n at run time
// Line starting with // are ignored, starting with # are comments

Sortcolumn 1

Colonne 1 
Subtitle Gene 
Width 15 
Optional 
Visible 
Class 
Class Gene 
From 1 
 
Colonne 2 
Subtitle Experimental model 
Width 20 
Optional 
Visible 
Class 
Class DO_term 
From 1 
Tag Experimental_model 
 
Colonne 3 
Subtitle Potential 
Width 40 
Optional 
Visible 
Class 
Class DO_term 
From 1 
Tag Potential_model

Colonne 4 
Subtitle Mouse protein 
Width 40 
Optional 
Visible 
Class 
Class Protein 
From 1 
Tag Ortholog_other 
Condition "*ENSMUS*"
 
Colonne 5 
Subtitle RNAi 
Width 20 
Optional 
Visible 
Class 
Class RNAi 
From 1 
Tag RNAi_result 
 
Colonne 6 
Subtitle Phenotype via RNAi 
Width 30 
Optional 
Visible 
Class 
Class Phenotype 
From 5 
Tag Phenotype 
 
Colonne 7 
Width 140 
Optional 
Visible 
Class 
Class Text 
From 6 
Tag Description 
 
 

// End of these definitions

Example test genes:

KeySet : "disease_data.key"
Gene : "WBGene00000149"
Gene : "WBGene00000193"
Gene : "WBGene00000227"
Gene : "WBGene00000240"
Gene : "WBGene00000241"
Gene : "WBGene00000242"
Gene : "WBGene00000244"
Gene : "WBGene00000539"
Gene : "WBGene00000540"
Gene : "WBGene00000541"
Gene : "WBGene00000542"
Gene : "WBGene00000846"
Gene : "WBGene00001049"
Gene : "WBGene00001366"
Gene : "WBGene00001414"
Gene : "WBGene00001486"
Gene : "WBGene00001865"
Gene : "WBGene00001983"
Gene : "WBGene00002183"
Gene : "WBGene00002235"
Gene : "WBGene00002275"
Gene : "WBGene00003047"
Gene : "WBGene00003052"
Gene : "WBGene00003068"
Gene : "WBGene00003074"
Gene : "WBGene00003163"
Gene : "WBGene00003561"
Gene : "WBGene00003562"
Gene : "WBGene00003892"
Gene : "WBGene00003967"
Gene : "WBGene00004035"
Gene : "WBGene00004092"
Gene : "WBGene00004208"
Gene : "WBGene00004271"
Gene : "WBGene00004360"
Gene : "WBGene00004887"
Gene : "WBGene00005021"
Gene : "WBGene00006412"
Gene : "WBGene00006444"
Gene : "WBGene00006446"
Gene : "WBGene00006514"
Gene : "WBGene00006598"
Gene : "WBGene00006721"
Gene : "WBGene00006742"
Gene : "WBGene00006775"
Gene : "WBGene00006944"
Gene : "WBGene00006961"
Gene : "WBGene00006993"
Gene : "WBGene00008052"
Gene : "WBGene00008107"
Gene : "WBGene00010898"
Gene : "WBGene00010974"
Gene : "WBGene00011095"
Gene : "WBGene00011261"
Gene : "WBGene00011559"
Gene : "WBGene00015184"
Gene : "WBGene00016045"
Gene : "WBGene00016744"
Gene : "WBGene00016789"
Gene : "WBGene00017137"
Gene : "WBGene00017864"
Gene : "WBGene00018042"
Gene : "WBGene00020169"
Gene : "WBGene00020647"
Gene : "WBGene00021820"
Gene : "WBGene00022296"
Gene : "WBGene00022463"
Gene : "WBGene00043992"
Gene : "WBGene00044330"

Example data(single gene):

.def above was slightly different to one used for this data as the .def now contains the Potential model tags in column 3

"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000005406";"WBPhenotype:0000018";"The contraction and relaxation movements of the pharynx occur at a greater frequency compared to that observed for control animals."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000005406";"WBPhenotype:0000059";"The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000005406";"WBPhenotype:0000202";"Any variation in the small linear ridges running along the lateral lines of the cuticle, lengthwise along the body compared to control (Wormatlas)."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000005406";"WBPhenotype:0000229";"Animals are shorter and thinner than control animals at the same developmental stage."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000005406";"WBPhenotype:0000438";"Variations that result in the deceleration of the rate, frequency or extent of the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, compared to control."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000005406";"WBPhenotype:0000643";"Animals exhibit deviations in self-propelled movement on a solid medium compared to control animals."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000005406";"WBPhenotype:0000646";"Animals move more slowly compared with control animals."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000005406";"WBPhenotype:0000689";"Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility)."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000005406";"WBPhenotype:0000758";"Animals exhibit defects in the process of shedding, part or all of its cuticle, during cuticle replacement that punctuates L4 to adult transition."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000005406";"WBPhenotype:0001010";"Animals appear unusually transparent when compared to control."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000006828";"WBPhenotype:0000018";"The contraction and relaxation movements of the pharynx occur at a greater frequency compared to that observed for control animals."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000006828";"WBPhenotype:0000059";"The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000006828";"WBPhenotype:0000202";"Any variation in the small linear ridges running along the lateral lines of the cuticle, lengthwise along the body compared to control (Wormatlas)."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000006828";"WBPhenotype:0000229";"Animals are shorter and thinner than control animals at the same developmental stage."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000006828";"WBPhenotype:0000438";"Variations that result in the deceleration of the rate, frequency or extent of the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, compared to control."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000006828";"WBPhenotype:0000643";"Animals exhibit deviations in self-propelled movement on a solid medium compared to control animals."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000006828";"WBPhenotype:0000646";"Animals move more slowly compared with control animals."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000006828";"WBPhenotype:0000689";"Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility)."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000006828";"WBPhenotype:0000758";"Animals exhibit defects in the process of shedding, part or all of its cuticle, during cuticle replacement that punctuates L4 to adult transition."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000006828";"WBPhenotype:0001010";"Animals appear unusually transparent when compared to control."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000072428";"WBPhenotype:0000018";"The contraction and relaxation movements of the pharynx occur at a greater frequency compared to that observed for control animals."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000072428";"WBPhenotype:0000059";"The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000072428";"WBPhenotype:0000202";"Any variation in the small linear ridges running along the lateral lines of the cuticle, lengthwise along the body compared to control (Wormatlas)."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000072428";"WBPhenotype:0000229";"Animals are shorter and thinner than control animals at the same developmental stage."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000072428";"WBPhenotype:0000438";"Variations that result in the deceleration of the rate, frequency or extent of the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, compared to control."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000072428";"WBPhenotype:0000643";"Animals exhibit deviations in self-propelled movement on a solid medium compared to control animals."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000072428";"WBPhenotype:0000646";"Animals move more slowly compared with control animals."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000072428";"WBPhenotype:0000689";"Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility)."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000072428";"WBPhenotype:0000758";"Animals exhibit defects in the process of shedding, part or all of its cuticle, during cuticle replacement that punctuates L4 to adult transition."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000072428";"WBPhenotype:0001010";"Animals appear unusually transparent when compared to control."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000078694";"WBPhenotype:0000018";"The contraction and relaxation movements of the pharynx occur at a greater frequency compared to that observed for control animals."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000078694";"WBPhenotype:0000059";"The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000078694";"WBPhenotype:0000202";"Any variation in the small linear ridges running along the lateral lines of the cuticle, lengthwise along the body compared to control (Wormatlas)."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000078694";"WBPhenotype:0000229";"Animals are shorter and thinner than control animals at the same developmental stage."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000078694";"WBPhenotype:0000438";"Variations that result in the deceleration of the rate, frequency or extent of the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, compared to control."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000078694";"WBPhenotype:0000643";"Animals exhibit deviations in self-propelled movement on a solid medium compared to control animals."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000078694";"WBPhenotype:0000646";"Animals move more slowly compared with control animals."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000078694";"WBPhenotype:0000689";"Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility)."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000078694";"WBPhenotype:0000758";"Animals exhibit defects in the process of shedding, part or all of its cuticle, during cuticle replacement that punctuates L4 to adult transition."
"WBGene00000149";"DOID:10652";"Alzheimer's disease";"ENSEMBL:ENSMUSP00000078694";"WBPhenotype:0001010";"Animals appear unusually transparent when compared to control."