TAIR CCC
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Revision as of 16:47, 9 December 2010 by Vanaukenk (talk | contribs) (→Specifications for Curation Pipeline)
Contents
Specifications for Curation Pipeline
Summary
This document is an outline of the Arabidopsis Textpresso for CCC pipeline for the initial trial run.
The trial run will be a search on all papers in the Textpresso for Arabidopsis corpus published in 2008.
Search results will be stored in three files:
1) all sentences returned by the search
2) sentences from papers already curated by TAIR for GO Cellular Component
3) sentences from papers not curated by TAIR for GO Cellular Component
Annotations can be made using an on-line curation form:
http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/tair/tair_ccc.cgi
with two different outputs:
1) a three-column 'user submission' output
2) a standard GO Gene Association File (GAF) format
Pipeline Details
Paper Acquisition
- TAIR corpus averages ~2500 papers/year
- TAIR curator sends PDFs of papers to be included in the corpus to Textpresso (Michael) approximately every six months
- Any additional papers for which TAIR does not have a PDF are downloaded by Textpresso team, if possible
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