Difference between revisions of "Strain"

From WormBaseWiki
Jump to navigationJump to search
(Created page with "=== Curating New Strain objects === Strain objects for strains which are not held at the CGC can be added to WormBase. Enter the new strain in the New Objects form: http://...")
 
 
(6 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
=== Curating New Strain objects ===
 
=== Curating New Strain objects ===
  
Strain objects for strains which are not held at the CGC can be added to WormBase.  
+
'''For strains that are not deposited with the CGC.'''
  
Enter the new strain in the New Objects form: http://tazendra.caltech.edu/~postgres/cgi-bin/new_objects.cgi?action=Update+Strains+%21
+
Curators can add new strains that they find in literature and external data sets by following this simple check list.
  
Mary Ann will periodically check the New Objects form, but you can send an email to her as well.
+
* Check the following file for existence of names which may appear as Other_name: ftp://ftp.sanger.ac.uk/pub/consortia/wormbase/STAFF/mh6/nightly_geneace/
Mary Ann will curate the Strain in Geneace and flag the 'approve' box in the New Objects form.
 
The new strain object will appear in the overnight geneace strain dump.  
 
  
The reason for a 'reject' will be conveyed to the curator who requested the new strain.
+
 
 +
'''Either'''
 +
 
 +
 
 +
* '''Preferred''': Create a ticket in the github issues system: https://github.com/WormBase/website/issues/new
 +
assign Paul Davis and include the WBPaper/info on the source of the Strain.
 +
 
 +
 
 +
'''Or'''
 +
 
 +
 
 +
* Enter the new strain in the New Objects form: http://tazendra.caltech.edu/~postgres/cgi-bin/new_objects.cgi?action=Update+Strains+%21
 +
 
 +
* If your strain isn't assigned then email Paul Davis
 +
 
 +
 +
* Paul will curate the Strain in Geneace.
 +
 
 +
 
 +
* The new strain object will appear in the overnight geneace strain dump  : ftp://ftp.sanger.ac.uk/pub/consortia/wormbase/STAFF/mh6/nightly_geneace/
 +
 
 +
 
 +
* The reason for a 'reject' will be conveyed to the curator who requested the new strain.
 +
 
 +
 
 +
* Once approved or rejected the OA curator should remove the object from the requested strain field in the OA, which removes it from the New Objects form.

Latest revision as of 16:30, 12 October 2017

Curating New Strain objects

For strains that are not deposited with the CGC.

Curators can add new strains that they find in literature and external data sets by following this simple check list.


Either


assign Paul Davis and include the WBPaper/info on the source of the Strain.


Or


  • If your strain isn't assigned then email Paul Davis


  • Paul will curate the Strain in Geneace.



  • The reason for a 'reject' will be conveyed to the curator who requested the new strain.


  • Once approved or rejected the OA curator should remove the object from the requested strain field in the OA, which removes it from the New Objects form.