Difference between revisions of "Strain"
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* Check the following file for existence of names which may appear as Other_name: ftp://ftp.sanger.ac.uk/pub/consortia/wormbase/STAFF/mh6/nightly_geneace/ | * Check the following file for existence of names which may appear as Other_name: ftp://ftp.sanger.ac.uk/pub/consortia/wormbase/STAFF/mh6/nightly_geneace/ | ||
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'''Either''' | '''Either''' | ||
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* '''Preferred''': Create a ticket in the github issues system: https://github.com/WormBase/website/issues/new | * '''Preferred''': Create a ticket in the github issues system: https://github.com/WormBase/website/issues/new | ||
and assign Paul Davis and include the WBPaper | and assign Paul Davis and include the WBPaper | ||
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'''Or''' | '''Or''' | ||
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* Enter the new strain in the New Objects form: http://tazendra.caltech.edu/~postgres/cgi-bin/new_objects.cgi?action=Update+Strains+%21 | * Enter the new strain in the New Objects form: http://tazendra.caltech.edu/~postgres/cgi-bin/new_objects.cgi?action=Update+Strains+%21 | ||
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* The new strain object will appear in the overnight geneace strain dump : ftp://ftp.sanger.ac.uk/pub/consortia/wormbase/STAFF/mh6/nightly_geneace/ | * The new strain object will appear in the overnight geneace strain dump : ftp://ftp.sanger.ac.uk/pub/consortia/wormbase/STAFF/mh6/nightly_geneace/ | ||
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* The reason for a 'reject' will be conveyed to the curator who requested the new strain. | * The reason for a 'reject' will be conveyed to the curator who requested the new strain. | ||
Revision as of 15:25, 12 October 2017
Curating New Strain objects
For strains that are not deposited with the CGC.
Curators can add new strains that they find in literature and external data sets by following this simple check list.
- Check the following file for existence of names which may appear as Other_name: ftp://ftp.sanger.ac.uk/pub/consortia/wormbase/STAFF/mh6/nightly_geneace/
Either
- Preferred: Create a ticket in the github issues system: https://github.com/WormBase/website/issues/new
and assign Paul Davis and include the WBPaper
Or
- Enter the new strain in the New Objects form: http://tazendra.caltech.edu/~postgres/cgi-bin/new_objects.cgi?action=Update+Strains+%21
- If your strain isn't assigned then email Paul Davis
- Paul will curate the Strain in Geneace.
- The new strain object will appear in the overnight geneace strain dump : ftp://ftp.sanger.ac.uk/pub/consortia/wormbase/STAFF/mh6/nightly_geneace/
- The reason for a 'reject' will be conveyed to the curator who requested the new strain.
- Once approved or rejected the OA curator should remove the object from the requested strain field in the OA, which removes it from the New Objects form.
