Specifications for source files
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Specifications for Textpresso for CCC Source Files
- The source files can be simplified a bit, but will retain the key information we need for curation and search and retrieval functions for the curation form.
- The format will continue to be a tab-delimited file containing, in order:
- Sentence number in source file; starting with 1 and ending with whatever total number of sentences are in the file
- SC (stands for Textpresso sentence score)
- Numerical Textpresso sentence score value
- PID (stands for paper identifier)
- Numerical identifier, this will vary for group
- For WormBase and dictyBase, who are sending annotations to the Protein2GO tool via web services, this identifier needs to be the PubMed ID
- If a PubMed ID is not available, we will then need a doi instead to send curation to Protein2GO
- If neither a PubMed ID nor a doi exists, then the annotation cannot be sent to Protein2GO
- For TAIR, who is not yet using Protein2GO, it can still be the TAIR document ID