Difference between revisions of "Specifications for source files"
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#SID (stands for Textpresso Sentence IDentifier) | #SID (stands for Textpresso Sentence IDentifier) | ||
#Numerical value of the sentence number in the document in Textpresso | #Numerical value of the sentence number in the document in Textpresso | ||
− | #Gene product name or synonym as identified by Textpresso search | + | #Gene product name or synonym as identified by Textpresso search (names below are as seen on Textpresso web sites) |
##WormBase: protein (C. elegans) | ##WormBase: protein (C. elegans) | ||
− | ##dictyBase: | + | ##dictyBase: dicty gene |
+ | ##TAIR: gene (arabidopsis) | ||
+ | #Textpresso component category match (names below are as seen on Textpresso web sites) | ||
+ | ##WormBase: CCC cellular component 2011-02-11 | ||
+ | '''##dictyBase: CCC cellular components''' | ||
+ | ##TAIR: CCC TAIR |
Revision as of 14:04, 26 March 2013
Specifications for Textpresso for CCC Source Files
- The source files can be simplified a bit, but will retain the key information we need for curation and search and retrieval functions for the curation form.
- The format will continue to be a tab-delimited file containing, in order:
- Sentence number in source file; starting with 1 and ending with whatever total number of sentences are in the file
- SSC (stands for Textpresso Sentence SCore)
- Numerical Textpresso sentence score value
- PID (stands for Paper IDentifier)
- Database code:numerical identifier
- For WormBase and dictyBase, who are sending annotations to the Protein2GO tool via web services, this identifier needs to be either a PubMed ID or a doi
- If neither a PubMed ID nor a doi exists, then the annotation cannot be sent to Protein2GO
- For TAIR, who is not yet using Protein2GO, it can still be the TAIR document ID
- SID (stands for Textpresso Sentence IDentifier)
- Numerical value of the sentence number in the document in Textpresso
- Gene product name or synonym as identified by Textpresso search (names below are as seen on Textpresso web sites)
- WormBase: protein (C. elegans)
- dictyBase: dicty gene
- TAIR: gene (arabidopsis)
- Textpresso component category match (names below are as seen on Textpresso web sites)
- WormBase: CCC cellular component 2011-02-11
##dictyBase: CCC cellular components
- TAIR: CCC TAIR