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| − | GAF 2.0 for gene-disease data includes all genes with the Experimental_model and/or Potential_model tags.
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| − | Format: The gene association file is a 17 column tab-delimited file, where 11 columns have to have data and 6 are optional.
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| − | {|Class="wikitable"
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| − | |+Mapping of GAF column to gene-disease data
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| − | !Column !! Content !! Required? !! Cardinality !! Example
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| − | |1 ||DB||'''required'''||1||WB
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| − | |2 ||DB Object ID||'''required'''|| 1||WBGene00007799
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| − | |3 || DB Object Symbol || '''required''' || 1 ||nrx-1
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| − | |4 || Qualifier || ''optional'' || 0 or greater ||(no value, leave empty)
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| − | |-
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| − | |5 || GO ID || '''required''' || 1 ||DOID:0060041
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| − | |-
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| − | |6 ||DB:Reference (<nowiki>|</nowiki>DB:Reference)||'''required'''||1 or greater<br/> (separate values with pipes)||WBPaper00041363<nowiki>|</nowiki>WBPaperXXXXXXXX
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| − | |-
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| − | |7 ||Evidence code||'''required'''||1|| IMP or ISS (use 'IMP' for Experimental_model <br/>genes and ISS for Potential_model genes)
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| − | |8 ||With (or) From||''optional''||0 or greater<br/> (separate values with pipes)||OMIM:600565<nowiki>|</nowiki>OMIM:600566
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| − | |-
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| − | |9 || Aspect|| '''required'''||1||D (D for disease ontology, all annotations<br/> have this value)
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| − | |-
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| − | |10||DB Object Name||''optional''||0 or 1||(no value, leave empty)
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| − | |11||DB Object Synonym (<nowiki>|</nowiki>Synonym)||''optional''||0 or greater||(no value, leave empty)
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| − | |12||DB Object Type||'''required'''||1||gene (all annotations have this value)
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| − | |13||Taxon||'''required'''||1 or 2||taxon:6239
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| − | |14||Date||required||1||20130422 (this is the date of annotation dumped under Date_last_updated;<br/>for potential_model genes, use the date on which the OMIM homology script is run)
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| − | |15|| Assigned By||'''required'''||1||WB
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| − | |16||Annotation Extension||''optional''||0 or greater||(no value, leave empty)
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| − | |-
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| − | |17||Gene Product Form ID||''optional''||0 or greater||(no value, leave empty)
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| − | |}
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| − | Back To [[Disease and Drugs]]
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