Difference between revisions of "Specifications for a GAF for gene-disease data"
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|+Mapping of GAF column to gene-disease data | |+Mapping of GAF column to gene-disease data | ||
|- | |- | ||
− | !Column !! Content !! Required? !! Cardinality !! Example | + | !Column !! Content !! Required? !! Cardinality !! acedb tag !! Example |
|- | |- | ||
|1 ||DB||required|| 1 || WB | |1 ||DB||required|| 1 || WB |
Revision as of 20:34, 6 February 2014
GAF 2.0 for gene-disease data includes all genes with the Experimental_model and Potential_model tags.
Column | Content | Required? | Cardinality | acedb tag | Example |
---|---|---|---|---|---|
1 | DB | required | 1 | WB | |
2 | DB Object ID | required | 1 | WBGene00007799 | |
3 | DB Object Symbol | required | 1 | ||
4 | Qualifier | optional | 0 or greater | ||
5 | GO ID | required | 1 | ||
6 | DB:Reference) | required | 1 or greater | ||
7 | Evidence code | required | 1 | ||
8 | With (or) From | optional | 0 or greater | ||
9 | Aspect | required | 1 | ||
10 | DB Object Name | optional | 0 or 1 | ||
11 | Synonym) | optional | 0 or greater | ||
12 | DB Object Type | required | 1 | ||
13 | taxon) | required | 1 or 2 | ||
14 | Date | required | 1 | ||
15 | Assigned By | required | 1 | ||
16 | Annotation Extension | optional | 0 or greater | ||
17 | Gene Product Form ID | optional | 0 or greater |