Difference between revisions of "Specifications for a GAF for gene-disease data"

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|+Mapping of GAF column to gene-disease data
 
|+Mapping of GAF column to gene-disease data
 
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!Column !! Content !! Required? !! Cardinality !! Example
+
!Column !! Content !! Required? !! Cardinality !! acedb tag !! Example
 
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|1 ||DB||required|| 1 || WB
 
|1 ||DB||required|| 1 || WB

Revision as of 20:34, 6 February 2014

GAF 2.0 for gene-disease data includes all genes with the Experimental_model and Potential_model tags.

Mapping of GAF column to gene-disease data
Column Content Required? Cardinality acedb tag Example
1 DB required 1 WB
2 DB Object ID required 1 WBGene00007799
3 DB Object Symbol required 1
4 Qualifier optional 0 or greater
5 GO ID required 1
6 DB:Reference) required 1 or greater
7 Evidence code required 1
8 With (or) From optional 0 or greater
9 Aspect required 1
10 DB Object Name optional 0 or 1
11 Synonym) optional 0 or greater
12 DB Object Type required 1
13 taxon) required 1 or 2
14 Date required 1
15 Assigned By required 1
16 Annotation Extension optional 0 or greater
17 Gene Product Form ID optional 0 or greater