Difference between revisions of "Specifications for a GAF for gene-disease data"
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|7 ||Evidence code||required||1|| | |7 ||Evidence code||required||1|| | ||
|- | |- | ||
− | |8 ||With (or) From||optional||0 or greater|| | + | |8 ||With (or) From||''optional''||0 or greater|| |
|- | |- | ||
|9 || Aspect|| required||1|| | |9 || Aspect|| required||1|| | ||
|- | |- | ||
− | |10||DB Object Name||optional||0 or 1|| | + | |10||DB Object Name||''optional''||0 or 1|| |
|- | |- | ||
− | |11||DB Object Synonym (|Synonym)||optional||0 or greater|| | + | |11||DB Object Synonym (|Synonym)||''optional''||0 or greater|| |
|- | |- | ||
− | |12|| | + | |12||DB Object Type||required||1|| |
+ | |- | ||
+ | |13||Taxon(|taxon)||required||1 or 2|| | ||
+ | |- | ||
+ | |14||Date||required||1|| | ||
+ | |- | ||
+ | |15|| Assigned By||required||1|| | ||
+ | |- | ||
+ | |16||Annotation Extension||''optional''||0 or greater|| | ||
+ | |- | ||
+ | |17||Gene Product Form ID||''optional''||0 or greater|| |
Revision as of 20:33, 6 February 2014
GAF 2.0 for gene-disease data includes all genes with the Experimental_model and Potential_model tags.
Column | Content | Required? | Cardinality | Example |
---|---|---|---|---|
1 | DB | required | 1 | WB |
2 | DB Object ID | required | 1 | WBGene00007799 |
3 | DB Object Symbol | required | 1 | |
4 | Qualifier | optional | 0 or greater | |
5 | GO ID | required | 1 | |
6 | DB:Reference) | required | 1 or greater | |
7 | Evidence code | required | 1 | |
8 | With (or) From | optional | 0 or greater | |
9 | Aspect | required | 1 | |
10 | DB Object Name | optional | 0 or 1 | |
11 | Synonym) | optional | 0 or greater | |
12 | DB Object Type | required | 1 | |
13 | taxon) | required | 1 or 2 | |
14 | Date | required | 1 | |
15 | Assigned By | required | 1 | |
16 | Annotation Extension | optional | 0 or greater | |
17 | Gene Product Form ID | optional | 0 or greater |