Difference between revisions of "Specifications for a GAF for gene-disease data"

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|7 ||Evidence code||required||1||
 
|7 ||Evidence code||required||1||
 
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|8 ||With (or) From||optional||0 or greater||
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|8 ||With (or) From||''optional''||0 or greater||
 
|-
 
|-
 
|9 || Aspect|| required||1||
 
|9 || Aspect|| required||1||
 
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|10||DB Object Name||optional||0 or 1||
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|10||DB Object Name||''optional''||0 or 1||
 
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|11||DB Object Synonym (|Synonym)||optional||0 or greater||
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|11||DB Object Synonym (|Synonym)||''optional''||0 or greater||
 
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|12||
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|12||DB Object Type||required||1||
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|-
 +
|13||Taxon(|taxon)||required||1 or 2||
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|14||Date||required||1||
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|15|| Assigned By||required||1||
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|16||Annotation Extension||''optional''||0 or greater||
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|17||Gene Product Form ID||''optional''||0 or greater||

Revision as of 20:33, 6 February 2014

GAF 2.0 for gene-disease data includes all genes with the Experimental_model and Potential_model tags.

Mapping of GAF column to gene-disease data
Column Content Required? Cardinality Example
1 DB required 1 WB
2 DB Object ID required 1 WBGene00007799
3 DB Object Symbol required 1
4 Qualifier optional 0 or greater
5 GO ID required 1
6 DB:Reference) required 1 or greater
7 Evidence code required 1
8 With (or) From optional 0 or greater
9 Aspect required 1
10 DB Object Name optional 0 or 1
11 Synonym) optional 0 or greater
12 DB Object Type required 1
13 taxon) required 1 or 2
14 Date required 1
15 Assigned By required 1
16 Annotation Extension optional 0 or greater
17 Gene Product Form ID optional 0 or greater