Difference between revisions of "Specifications for a GAF for gene-disease data"

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(Created page with "GAF 2.0 for gene-disease data includes all genes with the Experimental_model and Potential_model tags. {|Class="wikitable" |+Mapping of GAF column to gene-disease data |- !Co...")
 
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!Column !! Content !! Required? !! Cardinality !! Example
 
!Column !! Content !! Required? !! Cardinality !! Example
 
|-
 
|-
|1 || DB || required || 1 || WB
+
|1 ||DB||required|| 1 || WB
 
|-
 
|-
|2 || DB Object ID || required || 1 || WBGene
+
|2 ||DB Object ID||required|| 1 || WBGene00007799
 +
|-
 +
|3 || DB Object Symbol || required || 1 ||
 +
|-
 +
|4 || Qualifier || ''optional'' || 0 or greater ||
 +
|-
 +
|5 || GO ID || required || 1 ||
 +
|-
 +
|6 ||DB:Reference (|DB:Reference)||required||1 or greater||
 +
|-
 +
|7 ||Evidence code||required||1||
 +
|-
 +
|8 ||With (or) From||optional||0 or greater||
 +
|-
 +
|9 || Aspect|| required||1||
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|-
 +
|10||DB Object Name||optional||0 or 1||
 +
|-
 +
|11||DB Object Synonym (|Synonym)||optional||0 or greater||
 +
|-
 +
|12||

Revision as of 20:11, 6 February 2014

GAF 2.0 for gene-disease data includes all genes with the Experimental_model and Potential_model tags.

Mapping of GAF column to gene-disease data
Column Content Required? Cardinality Example
1 DB required 1 WB
2 DB Object ID required 1 WBGene00007799
3 DB Object Symbol required 1
4 Qualifier optional 0 or greater
5 GO ID required 1
6 DB:Reference) required 1 or greater
7 Evidence code required 1
8 With (or) From optional 0 or greater
9 Aspect required 1
10 DB Object Name optional 0 or 1
11 Synonym) optional 0 or greater
12