Difference between revisions of "Specifications for a GAF for gene-disease data"

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GAF 2.0 for gene-disease data includes all genes with the Experimental_model and Potential_model tags.
 
  
{|Class="wikitable"
 
|+Mapping of GAF column to gene-disease data
 
|-
 
!Column !! Content !! Required? !! Cardinality !! Example
 
|-
 
|1 ||DB||required||1||WB
 
|-
 
|2 ||DB Object ID||required|| 1||WBGene00007799
 
|-
 
|3 || DB Object Symbol || required || 1 ||nrx-1
 
|-
 
|4 || Qualifier || ''optional'' || 0 or greater ||(no value, leave empty)
 
|-
 
|5 || GO ID || required || 1 ||DOID:0060041
 
|-
 
|6 ||DB:Reference (|DB:Reference)||required||1 or greater||WBPaper00041363
 
|-
 
|7 ||Evidence code||required||1|| IMP (use 'IMP' for Experimental_model <br/>genes and ISS for Potential_model genes)
 
|-
 
|8 ||With (or) From||''optional''||0 or greater||(no value, leave empty)
 
|-
 
|9 || Aspect|| required||1||D (D for disease ontology, all annotations<br/> have this value)
 
|-
 
|10||DB Object Name||''optional''||0 or 1||
 
|-
 
|11||DB Object Synonym (|Synonym)||''optional''||0 or greater||(no value, leave empty)
 
|-
 
|12||DB Object Type||required||1||gene (all annotations have this value)
 
|-
 
|13||Taxon(|taxon)||required||1 or 2||taxon:6239
 
|-
 
|14||Date||required||1||20130422 (this is the date of annotation<br/>dumped under
 
|-
 
|15|| Assigned By||required||1||
 
|-
 
|16||Annotation Extension||''optional''||0 or greater||
 
|-
 
|17||Gene Product Form ID||''optional''||0 or greater||
 

Latest revision as of 22:36, 25 January 2017