Specifications for a Community Annotation Form

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Description of fields

Since this is for the community, it might be worth having a short one-line instruction for each field (shown in italics here), on top of the box for entering data:


Please see guidelines on how to write a concise description: http://wiki.wormbase.org/index.php/How_WormBase_writes_a_concise_description


1. Enter your first name.

Free text box; required

2. Enter your last name

Free text box; required

3. Enter a contact E-mail address

Free text box; required

4. Choose a species.

Autocomplete, Drop-down with predetermined values from the OA, if not found, free text is allowed.

  • Caenorhabditis elegans
  • Caenorhabditis sp. 3
  • Panagrellus redivivus
  • Cruznema tripartitum
  • Caenorhabditis brenneri
  • Caenorhabditis japonica
  • Caenorhabditis briggsae
  • Caenorhabditis remanei
  • Pristionchus pacificus
  • Brugia malayi
  • Homo sapiens


5. Choose a gene gin_locus gin_synonyms gin_seqname gin_wbgene this is the priority of how genes get autocompleted

J: If what is typed does not match, it stays as free-text

6.Write a concise description for the gene you've chosen.

Concise description: A big box for free-text, similar to the 'Description Text' box in the Concise Description OA.

7. Enter a published paper reference, either a PMID, WBPaper identifier or a DOI. Please note that WormBase will not accept meeting abstracts, Gazette articles or personal communications as references.

Reference: Auto-complete obo

J: Same feature, 'No match'and free text box. -- autocomplete on the paper field like the OA ? because that does allow abstracts, that is, it allows any papers, doesn't it ?

Also, once PMID or WBPaper is entered, can form pull up Paper information, meaning title etc etc, similar to the OA pulling up paper information in Term information, or what P2GO does. -- only will show paper information of papers that do match, not of a PMID (it won't go to NCBI to download the XML and display it)

Make list of which ones you do want instead of which ones to exclude from pap_type_index

1       | Journal_article       |           | two1841     | 2005-07-19 16:18:18.797932-07
2       | Review                |           | two1841     | 2005-07-19 16:18:18.799328-07
3       | Meeting_abstract      |           | two1841     | 2005-07-19 16:18:18.79984-07
4       | Gazette_article       |           | two1841     | 2005-07-19 16:18:18.800304-07
5       | Book_chapter          |           | two1841     | 2005-07-19 16:18:18.800755-07
6       | News                  |           | two1841     | 2005-07-19 16:18:18.801227-07
7       | Email                 |           | two1841     | 2005-07-19 16:18:18.801711-07
8       | Book                  |           | two1843     | 2010-01-22 13:44:25.465733-08
9       | Historical_article    |           | two1843     | 2010-01-22 13:44:25.465733-08
10      | Comment               |           | two1841     | 2005-07-19 16:18:18.803449-07
11      | Letter                |           | two1841     | 2005-07-19 16:18:18.803871-07
12      | Monograph             |           | two1841     | 2005-07-19 16:18:18.804305-07
13      | Editorial             |           | two1841     | 2005-07-19 16:18:18.804739-07
14      | Published_erratum     |           | two1841     | 2005-07-19 16:18:18.805171-07
15      | Retracted_publication |           | two1843     | 2010-01-22 13:44:25.465733-08
16      | Technical_report      |           | two1843     | 2010-01-22 13:44:25.465733-08
17      | Other                 |           | two324      | 2005-08-03 14:16:58.133568-07
18      | WormBook              |           | two1823     | 2006-06-02 13:58:02.301589-07
19      | Interview             |           | two1843     | 2009-07-23 16:11:32.147294-07
20      | Lectures              |           | two1843     | 2009-07-23 16:11:50.877118-07
21      | Congresses            |           | two1843     | 2009-07-23 16:12:06.780768-07
22      | Interactive_tutorial  |           | two1843     | 2009-07-23 16:12:20.299137-07
23      | Biography             |           | two1843     | 2010-01-22 13:44:25.465733-08
24      | Directory             |           | two1843     | 2010-01-22 13:44:25.465733-08