Difference between revisions of "Specifications for a Community Annotation Form"

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http://mangolassi.caltech.edu/~azurebrd/cgi-bin/forms/community_gene_description.cgi
 
http://mangolassi.caltech.edu/~azurebrd/cgi-bin/forms/community_gene_description.cgi
  
*Will look better if the right edges of the boxes for the fields lined up.
+
*Will look better if the right edges of the boxes for the fields are lined up.
 
*Make the guidelines font bigger.
 
*Make the guidelines font bigger.
*When text is entered in the concise descritpion box,it looks squished by the 'Choose a gene' box on top.
+
*When text is entered in the concise description box,it looks squished by the 'Choose a gene' box on top.
 +
*Would be nice to have a 'Go back to form' button from the submitted page, in case user wants to submit a second one.

Revision as of 21:22, 3 June 2013

Description of fields

1. Enter your first name.

Free text box; required

2. Enter your last name

Free text box; required

3. Enter a contact E-mail address

Free text box; required

4. Choose a species.

Autocomplete, Drop-down with predetermined values, if not found, free text is allowed. The preferred order is (note that Homo sapiens has been taken out):

  • Caenorhabditis elegans
  • Caenorhabditis briggsae
  • Pristionchus pacificus
  • Brugia malayi
  • Caenorhabditis brenneri
  • Caenorhabditis japonica
  • Caenorhabditis remanei
  • Caenorhabditis sp. 3
  • Panagrellus redivivus
  • Cruznema tripartitum


5. Choose a gene gin_locus gin_synonyms gin_seqname gin_wbgene this is the priority of how genes get autocompleted

J: If what is typed does not match, it stays as free-text

6.Write a concise description for the gene you've chosen.

Concise description: A big box for free-text, similar to the 'Description Text' box in the Concise Description OA.

7. Reference Box allowing PMID only.

Also, once PMID is entered, form pulls up Paper information, meaning title etc etc, similar to what P2GO does; Kimberly will talk to JC about it.

Here is the information we got from Tony on how this feature works in Protein2GO:

> We use the Europe PubMed Central web services for doing the lookup and validation - you can find details of all their available services at http://europepmc.org/RestfulWebService

> Here's an example of the kind of request that we make in order to do the validation:

> www.ebi.ac.uk/europepmc/webservices/rest/search/format=json&query=src:medANDext_id:16043488

Mock-up of form with field titles and guidelines

1. Enter your first name. This field is required.


2. Enter your last name. This field is required.


3. Enter a contact E-mail address. This field is required.


4. Choose a species.

Start typing in a species, the form will autocomplete the text. If you cannot find the species in the drop-down, please enter it manually. This field is required.


5. Choose a gene

Enter a gene name (e.g., abc-1). Sequence names (e.g., AC3.4) and WBGene IDs (e.g., WBGene00000011) are allowed. If the WormBase gene you begin typing is present in the drop-down, the form will autocomplete the text. If you cannot find the gene in the drop-down, please enter it manually.


6. Write a concise description for the gene you've chosen.

Please see guidelines on writing a concise description: http://wiki.wormbase.org/index.php/How_WormBase_writes_a_concise_description


7. Enter the PMID of a published paper reference.

Please note that WormBase will not accept meeting abstracts, gazette articles or personal communications as references.

Suggested changes to Form

http://mangolassi.caltech.edu/~azurebrd/cgi-bin/forms/community_gene_description.cgi

  • Will look better if the right edges of the boxes for the fields are lined up.
  • Make the guidelines font bigger.
  • When text is entered in the concise description box,it looks squished by the 'Choose a gene' box on top.
  • Would be nice to have a 'Go back to form' button from the submitted page, in case user wants to submit a second one.