Difference between revisions of "Specifications for a Community Annotation Form"
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Here is the information we got from Tony on how this feature works in Protein2GO: | Here is the information we got from Tony on how this feature works in Protein2GO: | ||
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− | > We use the Europe PubMed Central web services for doing the lookup and | + | > We use the Europe PubMed Central web services for doing the lookup and validation - you can find details of all their available services at http://europepmc.org/RestfulWebService |
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− | + | > Here's an example of the kind of request that we make in order to do the validation: | |
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− | > Here's an example of the kind of request that we make in order to do the | + | > www.ebi.ac.uk/europepmc/webservices/rest/search/format=json&query=src:medANDext_id:16043488 |
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− | > www.ebi.ac.uk/europepmc/webservices/rest/search/format=json&query=src: | ||
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==Mock-up of form with field titles and guidelines== | ==Mock-up of form with field titles and guidelines== |
Revision as of 15:13, 23 May 2013
Description of fields
1. Enter your first name.
Free text box; required
2. Enter your last name
Free text box; required
3. Enter a contact E-mail address
Free text box; required
4. Choose a species.
Autocomplete, Drop-down with predetermined values, if not found, free text is allowed. The preferred order is (note that Homo sapiens has been taken out):
- Caenorhabditis elegans
- Caenorhabditis briggsae
- Pristionchus pacificus
- Brugia malayi
- Caenorhabditis brenneri
- Caenorhabditis japonica
- Caenorhabditis remanei
- Caenorhabditis sp. 3
- Panagrellus redivivus
- Cruznema tripartitum
5. Choose a gene gin_locus gin_synonyms gin_seqname gin_wbgene this is the priority of how genes get autocompleted
J: If what is typed does not match, it stays as free-text
6.Write a concise description for the gene you've chosen.
Concise description: A big box for free-text, similar to the 'Description Text' box in the Concise Description OA.
7. Enter a published paper reference, either a PMID, WBPaper identifier or a DOI. Please note that WormBase will not accept meeting abstracts, Gazette articles or personal communications as references.
Free-text box allowing PMID or DOI.
Also, once PMID is entered, form pulls up Paper information, meaning title etc etc, similar to what P2GO does; Kimberly will talk to JC about it.
Here is the information we got from Tony on how this feature works in Protein2GO:
> We use the Europe PubMed Central web services for doing the lookup and validation - you can find details of all their available services at http://europepmc.org/RestfulWebService
> Here's an example of the kind of request that we make in order to do the validation:
> www.ebi.ac.uk/europepmc/webservices/rest/search/format=json&query=src:medANDext_id:16043488
Mock-up of form with field titles and guidelines
1. Enter your first name. This field is required.
2. Enter your last name. This field is required.
3. Enter a contact E-mail address. This field is required.
4. Choose a species.
Start typing in a species, the form will autocomplete the text. If you cannot find the species in the drop-down, please enter it manually. This field is required.
5. Choose a gene
Enter a gene name (e.g., abc-1). Sequence names (e.g., AC3.4) and WBGene IDs (e.g., WBGene00000011) are allowed. If the WormBase gene you begin typing is present in the drop-down, the form will autocomplete the text. If you cannot find the gene in the drop-down, please enter it manually.
6. Write a concise description for the gene you've chosen.
Please see guidelines on writing a concise description: http://wiki.wormbase.org/index.php/How_WormBase_writes_a_concise_description
7. Enter a published paper reference, either a PMID, WBPaper identifier, or a DOI.
Please note that WormBase will not accept meeting abstracts, gazette articles or personal communications as references.